Construct: ORF ccsbBroadEn_02985
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017377.1_s300c1, BRDN0000385801
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANKRD1 (27063)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 27063 | ANKRD1 | ankyrin repeat domain 1 | NM_014391.2 | 100% | 100% | |
| 2 | mouse | 107765 | Ankrd1 | ankyrin repeat domain 1 (ca... | NM_013468.3 | 87.2% | 90.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1023
- ORF length:
- 957
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT GGTACTGAAA GTAGAGGAAC TGGTCACTGG AAAGAAGAAT GGCAATGGGG 121 AGGCAGGGGA ATTCCTTCCT GAGGATTTCA GAGATGGAGA GTATGAAGCT GCTGTTACTT 181 TAGAGAAGCA GGAGGATCTG AAGACACTTC TAGCCCACCC TGTGACCCTG GGGGAGCAAC 241 AGTGGAAAAG CGAGAAACAA CGAGAGGCAG AGCTCAAAAA GAAAAAACTA GAACAAAGAT 301 CAAAGCTTGA AAATTTAGAA GACCTTGAAA TAATCATTCA ACTGAAGAAA AGGAAAAAAT 361 ACAGGAAAAC TAAAGTTCCA GTTGTAAAGG AACCAGAACC TGAAATCATT ACGGAACCTG 421 TGGATGTGCC TACGTTTCTG AAGGCTGCTC TGGAGAATAA ACTGCCAGTA GTAGAAAAAT 481 TCTTGTCAGA CAAGAACAAT CCAGATGTTT GTGATGAGTA TAAACGGACA GCTCTTCATA 541 GAGCATGCTT GGAAGGACAT TTGGCAATTG TGGAGAAGTT AATGGAAGCT GGAGCCCAGA 601 TCGAATTCCG TGATATGCTT GAATCCACAG CCATCCACTG GGCAAGCCGT GGAGGAAACC 661 TGGATGTTTT AAAATTGTTG CTGAATAAAG GAGCAAAAAT TAGCGCCCGA GATAAGTTGC 721 TCAGCACAGC GCTGCATGTG GCGGTGAGGA CTGGCCACTA TGAGTGCGCG GAGCATCTTA 781 TCGCCTGTGA GGCAGACCTC AACGCCAAAG ACAGAGAAGG AGATACCCCG TTGCATGATG 841 CGGTGAGACT GAACCGCTAT AAGATGATCC GACTCCTGAT TATGTATGGC GCGGATCTCA 901 ACATCAAGAA CTGTGCTGGG AAGACGCCGA TGGATCTGGT GCTACACTGG CAGAATGGAA 961 CCAAAGCAAT ATTCGACAGC CTCAGAGAGA ACTCCTACAA GACCTCTCGC ATAGCTACAT 1021 TCTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 1081 gcaacgaac