Construct: ORF ccsbBroadEn_02988

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000971.1_s300c1, BRDN0000385920
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GHITM (27069)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27069 GHITM growth hormone inducible tr... NM_014394.3 100% 100%
2 mouse 66092 Ghitm growth hormone inducible tr... NM_001199122.1 90.4% 91.6% (many diffs)
3 mouse 66092 Ghitm growth hormone inducible tr... NM_078478.5 90.4% 91.6% (many diffs)
4 mouse 66092 Ghitm growth hormone inducible tr... XM_006519372.3 90.4% 91.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1101
ORF length:
1035
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT GGCTGCAAGG CTGGTGTGTC TCCGGACACT ACCTTCTAGG GTTTTCCACC
121CAGCTTTCAC CAAGGCCTCC CCTGTTGTGA AGAATTCCAT CACGAAGAAT CAATGGCTGT
181TAACACCTAG CAGGGAATAT GCCACCAAAA CAAGAATTGG GATCCGGCGT GGGAGAACTG
241GCCAAGAACT CAAAGAGGCA GCATTGGAAC CATCGATGGA AAAAATATTT AAAATTGATC
301AGATGGGAAG ATGGTTTGTT GCTGGAGGGG CTGCTGTTGG TCTTGGAGCA TTGTGCTACT
361ATGGCTTGGG ACTGTCTAAT GAGATTGGAG CTATTGAAAA GGCTGTAATT TGGCCTCAGT
421ATGTCAAGGA TAGAATTCAT TCCACCTATA TGTACTTAGC AGGGAGTATT GGTTTAACAG
481CTTTGTCTGC CATAGCAATC AGCAGAACGC CTGTTCTCAT GAACTTCATG ATGAGAGGCT
541CTTGGGTGAC AATTGGTGTG ACCTTTGCAG CCATGGTTGG AGCTGGAATG CTGGTACGAT
601CAATACCATA TGACCAGAGC CCAGGCCCAA AGCATCTTGC TTGGTTGCTA CATTCTGGTG
661TGATGGGTGC AGTGGTGGCT CCTCTGACAA TATTAGGGGG TCCTCTTCTC ATCAGAGCTG
721CATGGTACAC AGCTGGCATT GTGGGAGGCC TCTCCACTGT GGCCATGTGT GCGCCCAGTG
781AAAAGTTTCT GAACATGGGT GCACCCCTGG GAGTGGGCCT GGGTCTCGTC TTTGTGTCCT
841CATTGGGATC TATGTTTCTT CCACCTACCA CCGTGGCTGG TGCCACTCTT TACTCAGTGG
901CAATGTACGG TGGATTAGTT CTTTTCAGCA TGTTCCTTCT GTATGATACC CAGAAAGTAA
961TCAAGCGTGC AGAAGTATCA CCAATGTATG GAGTTCAAAA ATATGATCCC ATTAACTCGA
1021TGCTGAGTAT CTACATGGAT ACATTAAATA TATTTATGCG AGTTGCAACT ATGCTGGCAA
1081CTGGAGGCAA CAGAAAGAAA TGGCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
1141attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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