Construct: ORF ccsbBroadEn_02991

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008062.1_s300c1, BRDN0000392015
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FOXP1 (27086)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27086 FOXP1 forkhead box P1 NM_001012505.1 100% 100%
2 human 27086 FOXP1 forkhead box P1 XM_017006168.2 100% 100%
3 human 27086 FOXP1 forkhead box P1 NM_001244808.2 13.1% 10.9% (many diffs)
4 human 27086 FOXP1 forkhead box P1 NM_001349341.2 13.1% 10.9% (many diffs)
5 human 27086 FOXP1 forkhead box P1 NM_001244814.2 13.1% 10.9% (many diffs)
6 human 27086 FOXP1 forkhead box P1 NM_001244816.1 13.1% 10.9% (many diffs)
7 human 27086 FOXP1 forkhead box P1 NM_001349338.2 13.1% 10.9% (many diffs)
8 human 27086 FOXP1 forkhead box P1 NM_001349340.2 13.1% 10.9% (many diffs)
9 human 27086 FOXP1 forkhead box P1 NM_032682.5 13.1% 10.9% (many diffs)
10 human 27086 FOXP1 forkhead box P1 XM_006713102.2 13.1% 10.9% (many diffs)
11 human 27086 FOXP1 forkhead box P1 XM_006713103.2 13.1% 10.9% (many diffs)
12 human 27086 FOXP1 forkhead box P1 XM_006713104.2 13.1% 10.9% (many diffs)
13 human 27086 FOXP1 forkhead box P1 XM_011533585.3 13.1% 10.9% (many diffs)
14 human 27086 FOXP1 forkhead box P1 XM_017006165.1 13.1% 10.9% (many diffs)
15 human 27086 FOXP1 forkhead box P1 NM_001244810.1 12.8% 10.6% (many diffs)
16 human 27086 FOXP1 forkhead box P1 NR_146143.2 3% (many diffs)
17 human 27086 FOXP1 forkhead box P1 NR_146142.2 3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
408
ORF length:
342
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAT GCAAGAATCT GGGACTGAGA CAAAAAGTAA CGGTTCAGCC ATCCAGAATG
121GGTCGGGCGG CAGCAACCAC TTACTAGAGT GCGGCGGTCT TCGGGAGGGG CGGTCCAACG
181GAGAGACGCC GGCCGTGGAC ATCGGGGCAG CTGACCTCGC CCACGCCCAG CAGCAGCAGC
241AACAGTGGCA TCTCATAAAC CATCAGCCCT CTAGGAGTCC CAGCAGTTGG CTTAAGAGAC
301TAATTTCAAG CCCTTGGGAG TTGGAAGTCC TGCAGGTCCC CTTGTGGGGA GCAGTTGCTG
361AGACGAAGAT GAGTGGACCT GTGTGTCAGC CTAACCCTTC CCCATTTTGC CCAACTTTCT
421TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)