Construct: ORF ccsbBroadEn_03032

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010476.1_s300c1, BRDN0000396831
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HTATSF1 (27336)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27336 HTATSF1 HIV-1 Tat specific factor 1 NM_001163280.1 100% 100%
2 human 27336 HTATSF1 HIV-1 Tat specific factor 1 NM_014500.5 100% 100%
3 human 27336 HTATSF1 HIV-1 Tat specific factor 1 XM_005262404.4 100% 100%
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2331
ORF length:
2265
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG CGGCACCAAC TTGGATGGGA ACGATGAGTT TGATGAGCAG TTGCGAATGC
121AAGAATTGTA CGGAGACGGC AAGGATGGTG ACACCCAGAC CGATGCCGGC GGAGAACCCG
181ATTCTCTCGG GCAGCAGCCG ACGGACACTC CCTACGAGTG GGACCTGGAC AAAAAGGCTT
241GGTTCCCCAA GATTACTGAA GATTTCATTG CTACATATCA GGCCAATTAT GGCTTCTCTA
301ACGATGGCGC ATCTAGTTCT ACCGCAAATG TTGAAGATGT CCATGCTAGG ACTGCAGAGG
361AACCTCCACA AGAAAAAGCC CCGGAACCCA CTGATGCCAG AAAGAAGGGA GAAAAAAGAA
421AGGCTGAGTC AGGATGGTTT CATGTTGAAG AAGACAGAAA TACAAATGTA TACGTGTCTG
481GTTTGCCTCC AGATATTACA GTGGATGAAT TTATACAACT TATGTCCAAG TTTGGCATTA
541TTATGAGAGA TCCTCAGACA GAAGAATTTA AGGTCAAACT TTACAAAGAT AATCAAGGAA
601ATCTTAAAGG AGACGGTCTT TGCTGTTATT TGAAAAGAGA ATCTGTGGAA CTTGCATTAA
661AACTTTTGGA TGAAGATGAA ATTAGAGGCT ACAAATTACA TGTTGAGGTG GCAAAGTTTC
721AACTGAAGGG AGAATATGAT GCCTCAAAGA AGAAGAAGAA GTGCAAAGAC TATAAGAAGA
781AGCTGTCTAT GCAACAAAAG CAGTTGGATT GGAGACCTGA GAGGCGAGCC GGACCATCCC
841GGATGCGCCA TGAGCGAGTT GTCATCATCA AGAATATGTT TCATCCTATG GATTTTGAGG
901ATGATCCGTT GGTGCTGAAT GAGATCAGAG AAGACCTTCG AGTAGAGTGT TCGAAGTTTG
961GACAAATTAG GAAACTCCTT CTCTTTGATA GGCACCCAGA TGGTGTGGCC TCTGTGTCCT
1021TTCGGGATCC AGAGGAAGCT GATTATTGTA TTCAGACTCT CGATGGAAGA TGGTTTGGTG
1081GCCGTCAAAT CACTGCCCAG GCATGGGATG GGACTACAGA TTATCAGGTG GAGGAAACCT
1141CAAGAGAAAG GGAGGAAAGG CTGAGAGGAT GGGAGGCTTT CCTCAATGCT CCTGAGGCCA
1201ACAGAGGCCT TAGGCGTTCA GATTCTGTCT CTGCTTCCGA AAGGGCAGGG CCTTCTAGAG
1261CAAGGCATTT TTCAGAGCAC CCCAGCACAT CTAAAATGAA TGCTCAAGAA ACTGCAACTG
1321GAATGGCGTT TGAAGAACCT ATAGATGAGA AGAAGTTTGA AAAGACAGAA GATGGGGGAG
1381AATTTGAAGA AGGTGCTTCT GAAAACAATG CTAAGGAAAG TAGCCCCGAA AAAGAGGCTG
1441AAGAAGGCTG CCCTGAAAAA GAATCTGAAG AGGGCTGCCC CAAAAGAGGG TTTGAAGGCA
1501GCTGCTCCCA AAAAGAGTCT GAAGAAGGCA ATCCCGTAAG AGGATCTGAA GAGGATAGTC
1561CTAAAAAAGA GTCTAAAAAG AAGACACTCA AAAATGATTG TGAAGAGAAT GGCCTTGCAA
1621AGGAATCTGA AGATGACCTC AACAAGGAGT CTGAAGAGGA GGTTGGCCCC ACAAAAGAGT
1681CCGAAGAAGA TGACTCAGAG AAAGAGTCTG ATGAAGACTG CTCTGAAAAA CAGTCTGAAG
1741ATGGCTCCGA AAGAGAATTT GAAGAAAATG GTCTCGAGAA AGATTTGGAC GAGGAAGGTT
1801CTGAAAAGGA GCTTCATGAA AATGTTCTTG ACAAAGAGTT AGAAGAAAAT GACTCTGAAA
1861ACTCCGAATT TGAAGATGAC GGCTCTGAAA AAGTGTTAGA TGAGGAAGGC TCTGAGAGAG
1921AGTTTGACGA AGATTCAGAT GAAAAGGAAG AAGAGGAGGA TACATATGAA AAAGTATTTG
1981ATGATGAGTC TGATGAGAAA GAGGATGAAG AATATGCAGA TGAAAAGGGG CTTGAAGCTG
2041CTGATAAAAA GGCGGAAGAA GGTGATGCAG ATGAAAAGCT GTTTGAAGAG TCAGATGACA
2101AGGAAGATGA AGATGCAGAT GGAAAGGAAG TTGAAGATGC TGACGAAAAG TTGTTCGAAG
2161ATGATGATTC CAATGAGAAG TTGTTTGATG AGGAGGAAGA TTCCAGTGAG AAGTTGTTTG
2221ACGATTCTGA TGAGAGGGGG ACTTTGGGTG GTTTTGGGAG TGTTGAAGAA GGGCCCCTAT
2281CCACTGGCAG CAGCTTTATT CTCAGTAGCG ATGATGATGA CGATGATATT TACCCAACTT
2341TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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