Construct: ORF ccsbBroadEn_03062
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009965.1_s300c1, BRDN0000456157
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- COMMD5 (28991)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 28991 | COMMD5 | COMM domain containing 5 | NM_001081003.3 | 100% | 100% | |
| 2 | human | 28991 | COMMD5 | COMM domain containing 5 | NM_001081004.3 | 100% | 100% | |
| 3 | human | 28991 | COMMD5 | COMM domain containing 5 | NM_001287237.1 | 100% | 100% | |
| 4 | human | 28991 | COMMD5 | COMM domain containing 5 | NM_014066.4 | 100% | 100% | |
| 5 | human | 101928879 | LOC101928879 | COMM domain-containing prot... | XM_017008884.1 | 77.1% | 72.1% | (many diffs) |
| 6 | human | 28991 | COMMD5 | COMM domain containing 5 | XR_002956629.1 | 54.1% | 1_202del;875_1241del | |
| 7 | human | 28991 | COMMD5 | COMM domain containing 5 | XR_928321.3 | 49.8% | 1_128del;801_1347del | |
| 8 | human | 28991 | COMMD5 | COMM domain containing 5 | XR_002956628.1 | 47.2% | 1_202del;875_1421del | |
| 9 | human | 28991 | COMMD5 | COMM domain containing 5 | XR_428379.3 | 45.8% | 1_248del;921_1467del | |
| 10 | human | 28991 | COMMD5 | COMM domain containing 5 | XR_928323.3 | 41.9% | 1_383del;1056_1602del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 738
- ORF length:
- 672
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC TGCTGTGGGG GCTGCAACTC CATACCTGCA TCATCCTGGT GATAGTCACA 121 GTGGCCGAGT GAGTTTCTTG GGGGCCCAGC TTCCTCCAGA GGTGGCAGCA ATGGCCCGGC 181 TACTAGGGGA CCTAGACAGG AGCACGTTCA GAAAGTTGCT GAAGTTTGTG GTCAGCAGCC 241 TGCAGGGGGA GGACTGCCGA GAGGCTGTGC AGCGTCTTGG GGTCAGCGCC AACCTGCCGG 301 AGGAGCAGCT GGGTGCCCTG CTGGCAGGCA TGCACACACT GCTCCAGCAG GCCCTCCGTC 361 TGCCCCCCAC CAGCCTGAAG CCTGACACCT TCAGGGACCA GCTCCAGGAG CTCTGCATCC 421 CCCAAGACCT GGTCGGGGAC TTGGCCAGCG TGGTATTTGG GAGCCAGCGG CCCCTCCTTG 481 ATTCTGTGGC CCAGCAGCAG GGGGCCTGGC TGCCGCATGT TGCTGACTTT CGGTGGCGGG 541 TGGATGTAGC AATCTCCACC AGTGCCCTGG CTCGCTCCCT GCAGCCGAGC GTCCTGATGC 601 AGCTGAAGCT TTCAGATGGG TCAGCATACC GCTTTGAGGT CCCCACAGCC AAGTTCCAGG 661 AGCTGCGGTA CAGCGTGGCC CTGGTCCTAA AGGAGATGGC AGATCTGGAG AAGAGGTGTG 721 AGCGCAGACT GCAGGACTGC CCAACTTTCT TGTACAAAGT TGGcattata agaaagcatt 781 gcttatcaat ttgttgcaac gaac