Construct: ORF ccsbBroadEn_03064
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003479.1_s300c1, BRDN0000389059
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC43A3 (29015)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 29015 | SLC43A3 | solute carrier family 43 me... | NM_001278201.2 | 100% | 100% | |
| 2 | human | 29015 | SLC43A3 | solute carrier family 43 me... | NM_014096.4 | 100% | 100% | |
| 3 | human | 29015 | SLC43A3 | solute carrier family 43 me... | NM_017611.2 | 100% | 100% | |
| 4 | human | 29015 | SLC43A3 | solute carrier family 43 me... | NM_199329.3 | 100% | 100% | |
| 5 | human | 29015 | SLC43A3 | solute carrier family 43 me... | NM_001278206.2 | 97.4% | 97.4% | 184_222del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1539
- ORF length:
- 1473
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGGCCAGGGC CTGCCCCTGC ACGTGGCCAC ACTGCTGACT GGGCTGCTGG 121 AATGCCTGGG CTTTGCTGGC GTCCTCTTTG GCTGGCCTTC ACTAGTGTTT GTCTTCAAGA 181 ATGAAGATTA CTTTAAGGAT CTGTGTGGAC CAGATGCTGG GCCGATTGGC AATGCCACAG 241 GGCAGGCTGA CTGCAAAGCC CAGGATGAGA GGTTCTCACT CATCTTCACC CTGGGGTCCT 301 TCATGAACAA CTTCATGACA TTCCCCACTG GCTACATCTT TGACCGGTTC AAGACCACCG 361 TGGCACGCCT CATAGCCATA TTTTTCTACA CCACCGCCAC ACTCATCATA GCCTTCACCT 421 CTGCAGGCTC AGCCGTGCTG CTCTTCCTGG CCATGCCAAT GCTCACCATT GGGGGAATCC 481 TGTTTCTCAT CACCAACCTG CAGATTGGGA ACCTATTTGG CCAACACCGT TCGACCATCA 541 TCACTCTGTA CAATGGAGCA TTTGACTCTT CCTCGGCAGT CTTCCTTATT ATTAAGCTTC 601 TTTATGAAAA AGGCATCAGC CTCAGGGCCT CCTTCATCTT CATCTCTGTC TGCAGTACCT 661 GGCATGTAGC ACGCACTTTC CTCCTGATGC CCCGGGGGCA CATCCCATAC CCACTGCCCC 721 CCAACTACAG CTATGGCCTG TGCCCTGGGA ATGGCACCAC AAAGGAAGAG AAGGAAACAG 781 CTGAGCATGA AAACAGGGAG CTACAGTCAA AGGAGTTCCT TTCAGCGAAG GAAGAGACCC 841 CAGGGGCAGG GCAGAAGCAG GAACTCCGCT CCTTCTGGAG CTACGCTTTC TCTCGGCGCT 901 TTGCCTGGCA CCTGGTGTGG CTGTCTGTGA TACAGTTGTG GCACTACCTC TTCATTGGCA 961 CTCTCAACTC CTTGCTGACC AACATGGCCG GTGGGGACAT GGCACGAGTC AGCACCTACA 1021 CAAATGCCTT TGCCTTCACT CAGTTCGGAG TGCTGTGTGC CCCCTGGAAT GGCCTGCTCA 1081 TGGACCGGCT TAAACAGAAG TACCAGAAGG AAGCAAGAAA GACAGGTTCC TCCACTTTGG 1141 CGGTGGCCCT CTGCTCGACG GTGCCTTCGC TGGCCCTGAC ATCCCTGCTG TGCCTGGGCT 1201 TCGCCCTCTG TGCCTCAGTC CCCATCCTCC CTCTCCAGTA CCTCACCTTC ATCCTGCAAG 1261 TGATCAGCCG CTCCTTCCTC TATGGGAGCA ACGCGGCCTT CCTCACCCTT GCTTTCCCTT 1321 CAGAGCACTT TGGCAAGCTC TTTGGGCTGG TGATGGCCTT GTCGGCTGTG GTGTCTCTGC 1381 TCCAGTTCCC CATCTTCACC CTCATCAAAG GCTCCCTTCA GAATGACCCA TTTTACGTGA 1441 ATGTGATGTT CATGCTTGCC ATTCTTCTGA CATTCTTCCA CCCCTTTCTG GTATATCGGG 1501 AATGCCGTAC TTGGAAAGAA AGTCCCTCTG CAATTGCATA CCCAACTTTC TTGTACAAAG 1561 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac