Construct: ORF ccsbBroadEn_03117

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011156.1_s300c1, BRDN0000388374
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CERS2 (29956)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 29956 CERS2 ceramide synthase 2 NM_022075.5 100% 100%
2 human 29956 CERS2 ceramide synthase 2 NM_181746.3 100% 100%
3 human 29956 CERS2 ceramide synthase 2 XM_011509452.3 100% 100%
4 human 29956 CERS2 ceramide synthase 2 XM_011509451.2 95% 95% 1_60del
5 mouse 76893 Cers2 ceramide synthase 2 NM_001320492.1 90.8% 92.3% (many diffs)
6 mouse 76893 Cers2 ceramide synthase 2 NM_029789.2 90.8% 92.3% (many diffs)
7 mouse 76893 Cers2 ceramide synthase 2 XM_006502260.1 90.8% 92.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1206
ORF length:
1140
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCT CCAGACCTTG TATGATTACT TCTGGTGGGA ACGTCTGTGG CTGCCTGTGA
121ACTTGACCTG GGCCGATCTA GAAGACCGAG ATGGACGTGT CTACGCCAAA GCCTCAGATC
181TCTATATCAC GCTGCCCCTG GCCTTGCTCT TCCTCATCGT TCGATACTTC TTTGAGCTGT
241ACGTGGCTAC ACCACTGGCT GCCCTCTTGA ACATAAAGGA GAAAACTCGG CTGCGGGCAC
301CTCCCAACGC CACCTTGGAA CATTTCTACC TGACCAGTGG CAAGCAGCCC AAGCAGGTGG
361AAGTAGAGCT TTTGTCCCGG CAGAGCGGGC TCTCTGGCCG CCAGGTAGAG CGTTGGTTCC
421GTCGCCGCCG CAACCAGGAC CGGCCCAGTC TCCTCAAGAA GTTCCGAGAA GCCAGCTGGA
481GATTCACATT TTACCTGATT GCCTTCATTG CCGGCATGGC CGTCATTGTG GATAAACCCT
541GGTTCTATGA CATGAAGAAA GTTTGGGAGG GATATCCCAT ACAGAGCACT ATCCCTTCCC
601AGTATTGGTA CTACATGATT GAACTTTCCT TCTACTGGTC CCTGCTCTTC AGCATTGCCT
661CTGATGTCAA GCGAAAGGAT TTCAAGGAAC AGATCATCCA CCATGTGGCC ACCATCATTC
721TCATCAGCTT TTCCTGGTTT GCCAATTACA TCCGAGCTGG GACTCTAATC ATGGCTCTGC
781ATGACTCTTC CGATTACCTG CTGGAGTCAG CCAAGATGTT TAACTACGCG GGATGGAAGA
841ACACCTGCAA CAACATCTTC ATCGTCTTCG CCATTGTTTT TATCATCACC CGACTGGTCA
901TCCTGCCCTT CTGGATCCTG CATTGCACCC TGGTGTACCC ACTGGAGCTC TATCCTGCCT
961TCTTTGGCTA TTACTTCTTC AATTCCATGA TGGGAGTTCT ACAGCTGCTG CATATCTTCT
1021GGGCCTACCT CATTTTGCGC ATGGCCCACA AGTTCATAAC TGGAAAGCTG GTAGAAGATG
1081AACGCAGTGA CCGGGAAGAA ACAGAGAGCT CAGAGGGGGA GGAGGCTGCA GCTGGGGGAG
1141GAGCAAAGAG CCGGCCCCTA GCCAATGGCC ACCCCATCCT CAATAACAAC CATCGTAAGA
1201ATGACTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
1261gttgcaacga ac

Download FASTA (ORF) (Full)