Construct: ORF ccsbBroadEn_03200

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011970.1_s300c1, BRDN0000456009
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
YBX2 (51087)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51087 YBX2 Y-box binding protein 2 NM_015982.4 100% 100%
2 human 51087 YBX2 Y-box binding protein 2 XM_017024713.2 96% 96% 368_412del
3 mouse 53422 Ybx2 Y box protein 2 XM_006533738.3 88.9% 89% (many diffs)
4 mouse 53422 Ybx2 Y box protein 2 NM_016875.2 88.5% 89.8% (many diffs)
5 mouse 53422 Ybx2 Y box protein 2 XM_006533739.3 81% 80.8% (many diffs)
6 mouse 53422 Ybx2 Y box protein 2 XM_006533740.1 68.6% 68.1% (many diffs)
7 mouse 53422 Ybx2 Y box protein 2 NM_001347634.1 68.2% 68.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1158
ORF length:
1092
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG CGAGGTGGAG GCGGCAGCGG GGGCTACAGC GGTCCCCGCG GCGACGGTGC
121CCGCGACGGC GGCAGGGGTG GTAGCGGTGG TGGTACCGGT GCCCGCAGGG GAGCCGCAGA
181AAGGCGGCGG GGCGGGCGGC GGGGGCGGAG CCGCCTCGGG CCCCGCTGCT GGGACCCCCT
241CGGCGCCGGG CTCCCGCACC CCTGGCAATC CGGCGACGGC GGTCTCGGGA ACCCCCGCCC
301CCCCGGCCCG GAGTCAGGCG GACAAGCCGG TGCTGGCAAT CCAAGTCCTG GGCACTGTCA
361AATGGTTCAA CGTCCGGAAT GGTTACGGAT TCATCAACAG GAATGACACC AAGGAAGATG
421TCTTTGTTCA CCAGACAGCT ATTAAAAGAA ACAACCCCAG GAAGTTTCTG CGCAGCGTTG
481GAGATGGGGA GACTGTGGAA TTTGATGTCG TGGAAGGAGA GAAGGGCGCA GAAGCCACTA
541ATGTAACTGG GCCTGGGGGA GTACCCGTGA AGGGCAGCCG TTATGCCCCC AACCGACGTA
601AGTCCCGCCG ATTCATCCCC CGGCCTCCCT CAGTTGCCCC ACCACCCATG GTGGCAGAGA
661TCCCCTCGGC GGGGACAGGA CCTGGCAGTA AAGGGGAGCG GGCTGAAGAC TCTGGGCAAC
721GGCCCCGACG ATGGTGCCCC CCACCCTTCT TCTACCGACG GCGGTTTGTG CGAGGCCCCC
781GGCCTCCCAA CCAGCAGCAG CCTATAGAGG GCACTGACAG GGTAGAACCC AAAGAGACAG
841CCCCATTGGA GGGGCACCAA CAGCAGGGAG ATGAGCGAGT CCCCCCGCCC AGATTCCGGC
901CCAGGTACCG AAGGCCTTTC CGCCCCAGGC CACGCCAGCA GCCTACCACA GAAGGTGGGG
961ATGGTGAGAC CAAGCCCAGC CAAGGTCCCG CTGATGGTTC CCGGCCTGAG CCCCAGCGCC
1021CACGAAACCG CCCCTACTTC CAGCGGAGAC GGCAGCAGGC CCCTGGCCCC CAGCAGGCCC
1081CTGGCCCCCG GCAGCCCGCA GCCCCTGAGA CCTCAGCCCC TGTCAACAGT GGGGACCCCA
1141CCACCACCAT CCTGGAGTGC CCAACTTTCT TGTACAAAGT TGGcattata agaaagcatt
1201gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)