Transcript: Mouse XM_006533739.3

PREDICTED: Mus musculus Y box protein 2 (Ybx2), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ybx2 (53422)
Length:
1511
CDS:
91..1098

Additional Resources:

NCBI RefSeq record:
XM_006533739.3
NBCI Gene record:
Ybx2 (53422)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006533739.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000095322 CTTCTTCTATCGAAGGCGGTT pLKO.1 684 CDS 100% 2.160 3.024 N Ybx2 n/a
2 TRCN0000107508 GCCCAGGTACCGAAGGCCTTT pLKO.1 837 CDS 100% 0.000 0.000 N YBX2 n/a
3 TRCN0000095320 CCGGAATGGTTACGGATTCAT pLKO.1 402 CDS 100% 5.625 4.500 N Ybx2 n/a
4 TRCN0000095319 CCCATAATTCATGACATCAAA pLKO.1 1183 3UTR 100% 5.625 3.938 N Ybx2 n/a
5 TRCN0000107505 CCATCTGGTATCTGCCAGTTT pLKO.1 1126 3UTR 100% 4.950 3.465 N YBX2 n/a
6 TRCN0000300724 CCATCTGGTATCTGCCAGTTT pLKO_005 1126 3UTR 100% 4.950 3.465 N YBX2 n/a
7 TRCN0000095323 GCGTCCACGAAACCGTCCCTA pLKO.1 954 CDS 100% 0.000 0.000 N Ybx2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006533739.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03200 pDONR223 100% 81% 80.8% None (many diffs) n/a
2 ccsbBroad304_03200 pLX_304 0% 81% 80.8% V5 (many diffs) n/a
3 TRCN0000476765 CCCATGTGATCTCGCGATTGTGTC pLX_317 33.8% 81% 80.8% V5 (many diffs) n/a
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