Construct: ORF ccsbBroadEn_03228
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006539.1_s300c1, BRDN0000388964
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ING4 (51147)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51147 | ING4 | inhibitor of growth family ... | NM_001127582.2 | 100% | 100% | |
| 2 | human | 51147 | ING4 | inhibitor of growth family ... | NM_016162.4 | 99.5% | 99.1% | 391_392insAAG |
| 3 | human | 51147 | ING4 | inhibitor of growth family ... | NM_001127583.2 | 98.7% | 98.3% | 382_383insGCAAAAAGA |
| 4 | human | 51147 | ING4 | inhibitor of growth family ... | NM_001127584.2 | 98.3% | 98.3% | 378_379insAAAGGCAAAAAG |
| 5 | human | 51147 | ING4 | inhibitor of growth family ... | NM_001127585.2 | 90.3% | 89.9% | 37_38ins72 |
| 6 | human | 51147 | ING4 | inhibitor of growth family ... | XM_011520964.2 | 89.9% | 89.1% | 37_38ins72;319_320insAAG |
| 7 | human | 51147 | ING4 | inhibitor of growth family ... | XM_011520965.3 | 89.1% | 89.1% | 0_1ins81 |
| 8 | human | 51147 | ING4 | inhibitor of growth family ... | XM_005253698.4 | 80.3% | 80.3% | 0_1ins147 |
| 9 | human | 51147 | ING4 | inhibitor of growth family ... | XM_017019392.2 | 79.9% | 79.5% | 0_1ins147;244_245insAAG |
| 10 | human | 51147 | ING4 | inhibitor of growth family ... | XM_017019393.2 | 78.7% | 78.7% | 0_1ins147;231_232insAAAGGCAAAAAG |
| 11 | human | 51147 | ING4 | inhibitor of growth family ... | NM_001127586.2 | 71.8% | 68.2% | 500_501ins148;537_538ins62 |
| 12 | human | 51147 | ING4 | inhibitor of growth family ... | XR_242982.3 | 46.5% | 1_18del;518_519ins109;657_1263del | |
| 13 | human | 51147 | ING4 | inhibitor of growth family ... | XR_002957334.1 | 46.2% | (many diffs) | |
| 14 | human | 51147 | ING4 | inhibitor of growth family ... | XR_242983.3 | 45.6% | (many diffs) | |
| 15 | mouse | 28019 | Ing4 | inhibitor of growth family,... | NM_133345.2 | 95% | 98.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 813
- ORF length:
- 747
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TGCGGGGATG TATTTGGAAC ATTATCTGGA CAGTATTGAA AACCTTCCCT 121 TTGAATTACA GAGAAACTTT CAGCTCATGA GGGACCTAGA CCAAAGAACA GAGGACCTGA 181 AGGCTGAAAT TGACAAGTTG GCCACTGAGT ATATGAGTAG TGCCCGCAGC CTGAGCTCCG 241 AGGAAAAATT GGCCCTTCTC AAACAGATCC AGGAAGCCTA TGGCAAGTGC AAGGAATTTG 301 GTGACGACAA GGTGCAGCTT GCCATGCAGA CCTATGAGAT GGTGGACAAA CACATTCGGC 361 GGCTGGACAC AGACCTGGCC CGTTTTGAGG CTGATCTCAA GGAGAAACAG ATTGAGTCAA 421 GTGACTATGA CAGCTCTTCC AGCAAAGGCA AAAAGAAAGG CCGGACTCAA AAGGAGAAGA 481 AAGCTGCTCG TGCTCGTTCC AAAGGGAAAA ACTCGGATGA AGAAGCCCCC AAGACTGCCC 541 AGAAGAAGTT AAAGCTCGTG CGCACAAGTC CTGAGTATGG GATGCCCTCA GTGACCTTTG 601 GCAGTGTCCA CCCCTCTGAT GTGTTGGATA TGCCTGTGGA TCCCAACGAA CCCACCTATT 661 GCCTTTGTCA CCAGGTCTCC TATGGAGAGA TGATTGGCTG TGACAACCCT GATTGTTCCA 721 TTGAGTGGTT CCATTTTGCC TGTGTGGGGC TGACAACCAA GCCTCGGGGG AAATGGTTTT 781 GCCCACGCTG CTCCCAAGAA CGGAAGAAGA AATACCCAAC TTTCTTGTAC AAAGTtggca 841 ttataagaaa gcattgctta tcaatttgtt gcaacgaac