Construct: ORF ccsbBroadEn_03250
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002335.1_s300c1, BRDN0000397385
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DRICH1 (51233)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51233 | DRICH1 | aspartate rich 1 | NM_016449.4 | 100% | 100% | |
| 2 | human | 51233 | DRICH1 | aspartate rich 1 | XM_017028813.1 | 92.7% | 91.3% | (many diffs) |
| 3 | human | 51233 | DRICH1 | aspartate rich 1 | XM_011530206.1 | 69.3% | 69% | 686_699del;702_990del |
| 4 | human | 51233 | DRICH1 | aspartate rich 1 | XM_011530208.2 | 66.3% | 66% | 406_407ins30;656_669del;672_960del |
| 5 | human | 51233 | DRICH1 | aspartate rich 1 | XM_011530207.2 | 65.3% | 62.7% | (many diffs) |
| 6 | human | 51233 | DRICH1 | aspartate rich 1 | XM_011530209.2 | 55.4% | 55.1% | 298_299ins138;548_561del;564_852del |
| 7 | human | 51233 | DRICH1 | aspartate rich 1 | XM_011530210.2 | 49.3% | 49% | 0_1ins198;488_501del;504_792del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 753
- ORF length:
- 687
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG GAATATACTG ACCTGTTGTA TCAACTCCCA CTGTGGCTGG CCCAGGGGGA 121 AGGACGCACC CTGTTATGAA TCTGATACTG ATATTTATGA GACTGTGGCT GCTGCAACAT 181 CAGAATCCAC TACTGTAGAG CCTGGCAAGC TGGATGTGGG AGCCACGGAG GGCCAAGACC 241 TGCAGCACAT CAGCAACCAA AAGATGCCCA CAGGTCCCCC TGAGGACCGC CTGAGTTTAA 301 AATTTCTGCC ATCAAGTGAG GAAGACAATG ATGATGCCAA GATTTTACCA TCACCTGTCC 361 AGGGTTCTTC TGAGGACAAC CTGAGTTTAG TATGCCTACC ACGAAGTGAA GATGATGACT 421 GTGATGATGA TGATGATGAT GATGCCCAGA TTTTACCGTC ACGTGTCCAG GGTGGCTGTT 481 ACCGGTTTGA TAGCAGTTCT TGTTCTTCTG AGGACAACCT GAGTTTAGTA TGCCTACCAC 541 GAAGTGAAGA TGATGACTGT GATGATGATG ATGATGATGC CCAGATTTTA CCGTCACCTG 601 TCCAGGCTTG TTCTGAAGAT AGCCTGTTTT TAAGATGCTC ACTGAGACAC AAAGATGAAG 661 AAGAAGAAGA TGATGATGAC ATCCACATAA CAGCTCGGAT AGAAAGTGAC TTGACGCTGG 721 AGAGTCTAAG TGATGAAGAG ATTCATCCAG GGTGCCCAAC TTTCTTGTAC AAAGTtggca 781 ttataagaaa gcattgctta tcaatttgtt gcaacgaac