Construct: ORF ccsbBroadEn_03306
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008652.1_s300c1, BRDN0000386979
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SCARA3 (51435)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51435 | SCARA3 | scavenger receptor class A ... | NM_182826.1 | 100% | 100% | |
| 2 | human | 51435 | SCARA3 | scavenger receptor class A ... | XM_017013537.1 | 95.9% | 93.8% | (many diffs) |
| 3 | human | 51435 | SCARA3 | scavenger receptor class A ... | XM_017013536.2 | 94.3% | 92.5% | (many diffs) |
| 4 | human | 51435 | SCARA3 | scavenger receptor class A ... | NM_016240.3 | 75.8% | 74.3% | (many diffs) |
| 5 | human | 51435 | SCARA3 | scavenger receptor class A ... | XM_017013535.1 | 75.8% | 74.3% | (many diffs) |
| 6 | human | 51435 | SCARA3 | scavenger receptor class A ... | XR_949419.2 | 35.2% | 1_312del;1711_3968del | |
| 7 | mouse | 219151 | Scara3 | scavenger receptor class A,... | XM_017315980.1 | 68.6% | 70.3% | (many diffs) |
| 8 | mouse | 219151 | Scara3 | scavenger receptor class A,... | NM_172604.3 | 65.9% | 67.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1464
- ORF length:
- 1398
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTNTG TACAAAAAAG 61 TTGGCATGAA AGTGAGGTCG GCCGGCGGCG ATGGAGATGC CTTGTGCGTT ACAGAAGAGG 121 ACCTGGCGGG TGACGACGAG GACATGCCGA CCTTCCCATG CACCCAGAAG GGCCGGCCAG 181 GGCCCCGCTG CAGCCGCTGC CAGAAGAACC TATCTTTGCA CACATCGGTG CGGATTCTTT 241 ACCTCTTCCT GGCCCTGCTC CTGGTGGCCG TGGCTGTGTT GGCCTCTCTG GTTTTCAGAA 301 AAGTGGACTC TCTCTCCGAA GACATCTCCT TGACCCAGTC TATTTATGAC AAGAAGCTTG 361 TGTTAATGCA GAAAAATCTC CAGGGCCTGG ATCCGAAAGC CCTGAACAAC TGCTCTTTCT 421 GCCATGAAGC TGGGCAGCTG GGGCCAGAGA TCCGAAAACT GCAGGAGGAG CTGGAGGGAA 481 TTCAGAAGCT GCTTCTGGCC CAGGAGGTGC AGCTGGACCA GACCTTACAG GCCCAGGAGG 541 TGCTCTCCAC CACCAGCAGA CAAATCTCCC AGGAGATGGG CAGTTGCTCC TTCTCCATCC 601 ACCAGGTTAA CCAGTCTCTG GGGCTCTTCC TGGCCCAGGT GAGAGGCTGG CAGGCCACCA 661 CAGCTGGCCT GGACCTCTCT CTGAAGGACC TCACCCAGGA GTGCTACGAT GTCAAGGCTG 721 CAGTGCACCA GATCAACTTC ACCGTGGGGC AGACTTCCGA GTGGATCCAC GGGATCCAGC 781 GGAAGACAGA CGAGGAGACC CTGACCCTCC AGAAGATTGT CACCGACTGG CAGAACTACA 841 CACGGCTCTT CAGCGGCCTG CGCACCACCT CCACCAAGAC TGGAGAGGCG GTCAAGAACA 901 TCCAGGCCAC CCTGGGGGCC TCCTCACAGC GCATCAGCCA GAACTCAGAG AGCATGCACG 961 ACCTGGTACT CCAGGTCATG GGCTTGCAGC TGCAGCTGGA TAACATCTCG TCCTTCCTGG 1021 ATGACCACGA AGAGAACATG CATGATCTTC AGTACCATAC CCACTACGCC CAGAACCGCA 1081 CTGTGGAGAG GTTTGAGTCT CTGGAAGGAC GCATGGCTTC TCACGAGATT GAAATTGGCA 1141 CCATCTTCAC CAACATCAAT GCCACCGACA ACCACGTGCA CAGCATGCTC AAGTACCTGG 1201 ATGACGTGCG GCTCTCCTGC ACGCTGGGCT TCCACACCCA TGCCGAGGAG CTCTACTACC 1261 TGAACAAGTC TGTCTCCATC ATGCTGGGCA CCACAGACCT GCTCCGGGAG CGCTTCAGCC 1321 TGCTCAGTGC CCGGCTGGAC CTCAACGTCC GGAACCTCTC CATGATCGTG GAGGAGATGA 1381 AGGCAGTGGA CACACAGCAT GGAGAAATCC TTCGCAATGT CACCATCCTA CGAGGTCACA 1441 CTTTGTTTTC ACATAATCGG ATATGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1501 agcattgctt atcaatttgt tgcaacgaac