Construct: ORF ccsbBroadEn_03325
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018111.1_s300c1, BRDN0000394216
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- CXXC5 (51523)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51523 | CXXC5 | CXXC finger protein 5 | NM_001317199.2 | 100% | 100% | |
| 2 | human | 51523 | CXXC5 | CXXC finger protein 5 | NM_001317200.2 | 100% | 100% | |
| 3 | human | 51523 | CXXC5 | CXXC finger protein 5 | NM_001317201.1 | 100% | 100% | |
| 4 | human | 51523 | CXXC5 | CXXC finger protein 5 | NM_001317202.1 | 100% | 100% | |
| 5 | human | 51523 | CXXC5 | CXXC finger protein 5 | NM_001317203.2 | 100% | 100% | |
| 6 | human | 51523 | CXXC5 | CXXC finger protein 5 | NM_001317204.2 | 100% | 100% | |
| 7 | human | 51523 | CXXC5 | CXXC finger protein 5 | NM_001317205.1 | 100% | 100% | |
| 8 | human | 51523 | CXXC5 | CXXC finger protein 5 | NM_001317206.1 | 100% | 100% | |
| 9 | human | 51523 | CXXC5 | CXXC finger protein 5 | NM_001317207.1 | 100% | 100% | |
| 10 | human | 51523 | CXXC5 | CXXC finger protein 5 | NM_001317208.2 | 100% | 100% | |
| 11 | human | 51523 | CXXC5 | CXXC finger protein 5 | NM_001317209.2 | 100% | 100% | |
| 12 | human | 51523 | CXXC5 | CXXC finger protein 5 | NM_001317210.2 | 100% | 100% | |
| 13 | human | 51523 | CXXC5 | CXXC finger protein 5 | NM_001317211.2 | 100% | 100% | |
| 14 | human | 51523 | CXXC5 | CXXC finger protein 5 | NM_016463.9 | 100% | 100% | |
| 15 | mouse | 67393 | Cxxc5 | CXXC finger 5 | NM_133687.2 | 89.5% | 93.5% | (many diffs) |
| 16 | mouse | 67393 | Cxxc5 | CXXC finger 5 | XM_006526176.3 | 89.5% | 93.5% | (many diffs) |
| 17 | mouse | 67393 | Cxxc5 | CXXC finger 5 | XM_006526177.3 | 89.5% | 93.5% | (many diffs) |
| 18 | mouse | 67393 | Cxxc5 | CXXC finger 5 | XM_006526178.3 | 89.5% | 93.5% | (many diffs) |
| 19 | mouse | 67393 | Cxxc5 | CXXC finger 5 | XM_006526180.2 | 89.5% | 93.5% | (many diffs) |
| 20 | mouse | 67393 | Cxxc5 | CXXC finger 5 | XM_006526181.3 | 89.5% | 93.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1032
- ORF length:
- 966
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttgCCATGTC GAGCCTCGGC GGTGGCTCCC AGGATGCCGG CGGCAGTAGC AGCAGCAGCA 121 CCAATGGCAG CGGTGGCAGT GGCAGCAGTG GCCCAAAGGC AGGAGCAGCA GACAAGAGTG 181 CAGTGGTGGC TGCCGCCGCA CCAGCCTCAG TGGCAGATGA CACACCACCC CCCGAGCGTC 241 GGAACAAGAG CGGTATCATC AGTGAGCCCC TCAACAAGAG CCTGCGCCGC TCCCGCCCGC 301 TCTCCCACTA CTCTTCTTTT GGCAGCAGTG GTGGTAGTGG CGGTGGCAGC ATGATGGGCG 361 GAGAGTCTGC TGACAAGGCC ACTGCGGCTG CAGCCGCTGC CTCCCTGTTG GCCAATGGGC 421 ATGACCTGGC GGCGGCCATG GCGGTGGACA AAAGCAACCC TACCTCAAAG CACAAAAGTG 481 GTGCTGTGGC CAGCCTGCTG AGCAAGGCAG AGCGGGCCAC GGAGCTGGCA GCCGAGGGAC 541 AGCTGACGCT GCAGCAGTTT GCGCAGTCCA CAGAGATGCT GAAGCGCGTG GTGCAGGAGC 601 ATCTCCCGCT GATGAGCGAG GCGGGTGCTG GCCTGCCTGA CATGGAGGCT GTGGCAGGTG 661 CCGAAGCCCT CAATGGCCAG TCCGACTTCC CCTACCTGGG CGCTTTCCCC ATCAACCCAG 721 GCCTCTTCAT TATGACCCCG GCAGGTGTGT TCCTGGCCGA GAGCGCGCTG CACATGGCGG 781 GCCTGGCTGA GTACCCCATG CAGGGAGAGC TGGCCTCTGC CATCAGCTCC GGCAAGAAGA 841 AGCGGAAACG CTGCGGCATG TGCGCGCCCT GCCGGCGGCG CATCAACTGC GAGCAGTGCA 901 GCAGTTGTAG GAATCGAAAG ACTGGCCATC AGATTTGCAA ATTCAGAAAA TGTGAGGAAC 961 TCAAAAAGAA GCCTTCCGCT GCTCTGGAGA AGGTGATGCT TCCGACGGGA GCCGCCTTCC 1021 GGTGGTTTCA GTGACGGact ttcttgtaca aagttggcat tataagaaag cattgcttat 1081 caatttgttg caacgaac