Construct: ORF ccsbBroadEn_03381
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014542.1_s300c1, BRDN0000389250
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- INPP5K (51763)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51763 | INPP5K | inositol polyphosphate-5-ph... | NM_016532.4 | 100% | 100% | |
| 2 | human | 51763 | INPP5K | inositol polyphosphate-5-ph... | NM_001135642.2 | 83% | 83% | 0_1ins228 |
| 3 | human | 51763 | INPP5K | inositol polyphosphate-5-ph... | NM_130766.3 | 83% | 83% | 0_1ins228 |
| 4 | human | 51763 | INPP5K | inositol polyphosphate-5-ph... | XM_005256683.2 | 83% | 83% | 0_1ins228 |
| 5 | human | 51763 | INPP5K | inositol polyphosphate-5-ph... | XM_011523934.1 | 83% | 83% | 0_1ins228 |
| 6 | human | 51763 | INPP5K | inositol polyphosphate-5-ph... | XM_017024756.1 | 83% | 83% | 0_1ins228 |
| 7 | human | 51763 | INPP5K | inositol polyphosphate-5-ph... | XM_024450802.1 | 83% | 83% | 0_1ins228 |
| 8 | human | 51763 | INPP5K | inositol polyphosphate-5-ph... | XM_005256685.1 | 79.4% | 79.4% | 0_1ins276 |
| 9 | human | 51763 | INPP5K | inositol polyphosphate-5-ph... | XM_005256686.2 | 79.4% | 79.4% | 0_1ins276 |
| 10 | human | 51763 | INPP5K | inositol polyphosphate-5-ph... | XM_017024757.2 | 79.4% | 79.4% | 0_1ins276 |
| 11 | human | 51763 | INPP5K | inositol polyphosphate-5-ph... | XM_011523936.2 | 68.6% | 60.9% | 0_1ins415;140_149delGTGAGCCTGG |
| 12 | human | 51763 | INPP5K | inositol polyphosphate-5-ph... | XM_017024758.2 | 68.6% | 60.9% | 0_1ins415;140_149delGTGAGCCTGG |
| 13 | human | 51763 | INPP5K | inositol polyphosphate-5-ph... | XM_017024759.1 | 68.6% | 60.9% | 0_1ins415;140_149delGTGAGCCTGG |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1410
- ORF length:
- 1344
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG CTCGCGGAAG CTGAGCGGGC CGAAAGGCAG GAGGCTCAGC ATACACGTCG 121 TGACTTGGAA CGTGGCTTCG GCAGCGCCCC CTCTAGATCT CAGTGACCTG CTTCAGCTGA 181 ACAACCGGAA CCTCAATCTT GACATATATG TTATTGGTTT GCAGGAATTG AACTCTGGGA 241 TCATAAGCCT CCTTTCCGAT GCTGCCTTTA ATGACTCGTG GAGCAGTTTC CTCATGGATG 301 TGCTTTCCCC TCTGAGCTTC ATCAAGGTCT CCCATGTCCG TATGCAGGGG ATCCTCTTAC 361 TGGTCTTTGC CAAGTATCAG CATTTGCCCT ATATCCAGAT TCTGTCTACT AAATCCACCC 421 CCACTGGCCT GTTTGGGTAC TGGGGGAACA AAGGTGGAGT CAACATCTGC CTGAAGCTTT 481 ATGGCTACTA TGTCAGCATC ATCAACTGCC ACCTGCCTCC CCACATTTCC AACAATTACC 541 AGCGGCTGGA GCACTTTGAC CGGATCCTGG AGATGCAGAA TTGTGAGGGG CGAGACATCC 601 CAAACATCCT GGACCACGAC CTCATTATCT GGTTTGGAGA CATGAACTTT CGGATCGAGG 661 ACTTTGGGTT GCACTTTGTT CGGGAATCCA TTAAAAATCG GTGCTACGGT GGCCTGTGGG 721 AGAAGGACCA GCTCAGCATT GCCAAGAAAC ATGACCCGCT GCTCCGGGAG TTCCAGGAGG 781 GCCGCCTACT CTTCCCGCCC ACCTACAAGT TTGATAGGAA CTCCAACGAC TATGACACCA 841 GTGAGAAAAA ACGCAAGCCT GCATGGACCG ATCGCATCCT GTGGAGGCTG AAGCGGCAGC 901 CCTGTGCTGG CCCCGACACT CCCATACCGC CGGCGTCACA CTTCTCCTTG TCTCTGAGGG 961 GCTACAGCAG CCACATGACG TACGGCATCA GCGACCACAA GCCTGTCTCC GGCACGTTCG 1021 ACTTGGAGCT GAAGCCATTG GTGTCTGCTC CGCTGATCGT CCTGATGCCC GAGGACCTGT 1081 GGACCGTGGA AAATGACATG ATGGTCAGCT ACTCTTCAAC CTCGGACTTC CCCAGCAGCC 1141 CGTGGGACTG GATTGGACTG TACAAGGTGG GGCTGCGGGA CGTTAATGAC TACGTGTCCT 1201 ATGCCTGGGT CGGGGACAGC AAGGTCTCCT GCAGCGACAA CCTGAACCAG GTTTACATCG 1261 ACATCAGCAA TATCCCTACC ACTGAAGATG AGTTTCTCCT CTGTTACTAC AGCAACAGTC 1321 TGCGTTCTGT GGTGGGGATA AGCAGACCCT TCCAGATCCC GCCTGGCTCC TTGAGGGAGG 1381 ACCCACTGGG TGAAGCACAG CCACAGATCT GCCCAACTTT CTTGTACAAA GTtggcatta 1441 taagaaagca ttgcttatca atttgttgca acgaac