Construct: ORF ccsbBroadEn_03461
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006689.1_s300c1, BRDN0000387846
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF562 (54811)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54811 | ZNF562 | zinc finger protein 562 | NM_001130031.2 | 100% | 100% | |
| 2 | human | 54811 | ZNF562 | zinc finger protein 562 | NM_001130032.2 | 100% | 100% | |
| 3 | human | 54811 | ZNF562 | zinc finger protein 562 | XM_005259941.4 | 100% | 100% | |
| 4 | human | 54811 | ZNF562 | zinc finger protein 562 | NM_001300885.2 | 99.7% | 99.7% | 347_348insGCA |
| 5 | human | 54811 | ZNF562 | zinc finger protein 562 | XM_017026898.2 | 99.7% | 99.7% | 347_348insGCA |
| 6 | human | 54811 | ZNF562 | zinc finger protein 562 | XM_005259944.4 | 91.3% | 91% | 0_1ins103;2_3insTCTTACCA |
| 7 | human | 54811 | ZNF562 | zinc finger protein 562 | XM_011528100.3 | 83.8% | 83.8% | 0_1ins207 |
| 8 | human | 54811 | ZNF562 | zinc finger protein 562 | NM_017656.4 | 81.6% | 83% | (many diffs) |
| 9 | human | 93134 | ZNF561 | zinc finger protein 561 | NM_152289.3 | 78.6% | 72.5% | (many diffs) |
| 10 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_005260150.2 | 78.6% | 72.5% | (many diffs) |
| 11 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_006722938.3 | 76.2% | 71% | (many diffs) |
| 12 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_011528434.2 | 76.2% | 71% | (many diffs) |
| 13 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_024451780.1 | 76.1% | 69.5% | (many diffs) |
| 14 | human | 54811 | ZNF562 | zinc finger protein 562 | XM_011528102.3 | 73% | 73% | 0_1ins345 |
| 15 | human | 54811 | ZNF562 | zinc finger protein 562 | XM_005259951.4 | 72.7% | 72.5% | 0_1ins345;2_3insGCA |
| 16 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_011528436.2 | 72.6% | 68.2% | (many diffs) |
| 17 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_011528437.2 | 72.6% | 68.2% | (many diffs) |
| 18 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_017027478.1 | 72.6% | 68.2% | (many diffs) |
| 19 | human | 54811 | ZNF562 | zinc finger protein 562 | XM_005259952.4 | 66.4% | 66.4% | 0_1ins429 |
| 20 | human | 54811 | ZNF562 | zinc finger protein 562 | XM_017026899.2 | 66.4% | 66.4% | 0_1ins429 |
| 21 | human | 93134 | ZNF561 | zinc finger protein 561 | NM_001330365.2 | 66% | 61.8% | (many diffs) |
| 22 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_017027479.2 | 66% | 61.8% | (many diffs) |
| 23 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_017027481.1 | 66% | 61.8% | (many diffs) |
| 24 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_024451781.1 | 66% | 61.8% | (many diffs) |
| 25 | human | 93134 | ZNF561 | zinc finger protein 561 | XM_017027482.1 | 53.3% | 49.6% | (many diffs) |
| 26 | human | 729648 | ZNF812P | zinc finger protein 812, ps... | NR_146446.1 | 37.4% | (many diffs) | |
| 27 | human | 729648 | ZNF812P | zinc finger protein 812, ps... | NR_146445.1 | 36% | (many diffs) | |
| 28 | human | 729648 | ZNF812P | zinc finger protein 812, ps... | NR_146444.1 | 35.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1347
- ORF length:
- 1278
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCAGCCTTT GATATGTCCC ATGGGTTTTT TCCCAGGGAA CCAATCTGTC 121 CTTTTGAAGA AAAGACAAAG ATAGGAACGA TGGTAGAGGA CCACCGGTCA AATTCTTACC 181 AGGATTCAGT GACGTTTGAT GATGTGGCTG TGGAGTTCAC CCCAGAGGAG TGGGCTTTAC 241 TGGACACAAC TCAGAAATAC CTCTACAGAG ATGTGATGCT GGAGAACTAC ATGAACCTGG 301 CCTCTGTGGA TTTCTTTTTC TGCTTAACTT CAGAATGGGA AATACAACCT AGAACCAAAC 361 GGTCATCACT TCAGCAGGGT TTTTTGAAGA ATCAAATATT CACTGGGATA CAAATGCAGA 421 CAAGAAGCTA CAGTGGATGG AAACTCTGTG AGAATTGTGG AGAGGTCTTC AGTGAACAGT 481 TTTGCCTTAA GACACACATG AGAGCTCAGA ATGGAGGGAA CACTTTTGAG GGTAATTGTT 541 ATGGAAAAGA CAGCATCAGT GTGCACAAGG AAGCCTCTAT TGGACAAGAA CTTTCCAAAT 601 TTAATCCATG TGGAAAAGTC TTCACCTTAA CTCCAGGCCT TGCTGTGCAT CTTGAAATTC 661 TCAATGGAAG ACAACCCTAC AAATGTAAGG AATGTGGAAA AGGCTTTAAG TATTTTGCAA 721 GCCTTGATAA TCACATGGGA ATCCACATTG GAGAGAAACT CTGTGAATTT CAGGAATGTG 781 AGAGAGCCAT CACAACTTCC TCACACTTAA AGCAGTGTGT AGCAGTTCAT ACTGGAAAGA 841 AATCCGAAAA GACTAAGAAC TGTGGGAAAT CCTTCACTAA TTTTTCTCAA CTTTCTGCAC 901 ATGCAAAAAC TCATAAAGGA GAGAAGTCCT TTGAATGTAA AGAATGTGGA AGATCCTTTA 961 GAAATTCCTC ATCCTTTAAT GTTCACATTC AAATTCACAC TGGAATAAAA CCACACAAAT 1021 GTACGGAATG TGGGAAAGCC TTCACTAGAT CAACTCACCT TACTCAACAT GTAAGAACTC 1081 ACACTGGAAT AAAACCCTAT GAATGTAAGG AATGTGGCCA AGCCTTCACT CAGTACACGG 1141 GCCTTGCTAT ACACATACGA AATCACACTG GAGAGAAACC CTATCAGTGT AAGGAATGTG 1201 GGAAAGCCTT CAATAGATCT TCAACGCTTA CTCAACATAG AAGAATTCAC ACAGGAGAGA 1261 AGCCTTATGA ATGTGTTGAA TGTGGGAAGA CCTTCATTAC TTCTTCCCAT CGTAGTAAAC 1321 ATTTGAAAAC TCACAGTGGA GAAAGGTTGC CAACTTTCTT GTACAAAGTt ggcattataa 1381 gaaagcattg cttatcaatt tgttgcaacg aac