Construct: ORF ccsbBroadEn_03461

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006689.1_s300c1, BRDN0000387846
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF562 (54811)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54811 ZNF562 zinc finger protein 562 NM_001130031.2 100% 100%
2 human 54811 ZNF562 zinc finger protein 562 NM_001130032.2 100% 100%
3 human 54811 ZNF562 zinc finger protein 562 XM_005259941.4 100% 100%
4 human 54811 ZNF562 zinc finger protein 562 NM_001300885.2 99.7% 99.7% 347_348insGCA
5 human 54811 ZNF562 zinc finger protein 562 XM_017026898.2 99.7% 99.7% 347_348insGCA
6 human 54811 ZNF562 zinc finger protein 562 XM_005259944.4 91.3% 91% 0_1ins103;2_3insTCTTACCA
7 human 54811 ZNF562 zinc finger protein 562 XM_011528100.3 83.8% 83.8% 0_1ins207
8 human 54811 ZNF562 zinc finger protein 562 NM_017656.4 81.6% 83% (many diffs)
9 human 93134 ZNF561 zinc finger protein 561 NM_152289.3 78.6% 72.5% (many diffs)
10 human 93134 ZNF561 zinc finger protein 561 XM_005260150.2 78.6% 72.5% (many diffs)
11 human 93134 ZNF561 zinc finger protein 561 XM_006722938.3 76.2% 71% (many diffs)
12 human 93134 ZNF561 zinc finger protein 561 XM_011528434.2 76.2% 71% (many diffs)
13 human 93134 ZNF561 zinc finger protein 561 XM_024451780.1 76.1% 69.5% (many diffs)
14 human 54811 ZNF562 zinc finger protein 562 XM_011528102.3 73% 73% 0_1ins345
15 human 54811 ZNF562 zinc finger protein 562 XM_005259951.4 72.7% 72.5% 0_1ins345;2_3insGCA
16 human 93134 ZNF561 zinc finger protein 561 XM_011528436.2 72.6% 68.2% (many diffs)
17 human 93134 ZNF561 zinc finger protein 561 XM_011528437.2 72.6% 68.2% (many diffs)
18 human 93134 ZNF561 zinc finger protein 561 XM_017027478.1 72.6% 68.2% (many diffs)
19 human 54811 ZNF562 zinc finger protein 562 XM_005259952.4 66.4% 66.4% 0_1ins429
20 human 54811 ZNF562 zinc finger protein 562 XM_017026899.2 66.4% 66.4% 0_1ins429
21 human 93134 ZNF561 zinc finger protein 561 NM_001330365.2 66% 61.8% (many diffs)
22 human 93134 ZNF561 zinc finger protein 561 XM_017027479.2 66% 61.8% (many diffs)
23 human 93134 ZNF561 zinc finger protein 561 XM_017027481.1 66% 61.8% (many diffs)
24 human 93134 ZNF561 zinc finger protein 561 XM_024451781.1 66% 61.8% (many diffs)
25 human 93134 ZNF561 zinc finger protein 561 XM_017027482.1 53.3% 49.6% (many diffs)
26 human 729648 ZNF812P zinc finger protein 812, ps... NR_146446.1 37.4% (many diffs)
27 human 729648 ZNF812P zinc finger protein 812, ps... NR_146445.1 36% (many diffs)
28 human 729648 ZNF812P zinc finger protein 812, ps... NR_146444.1 35.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1347
ORF length:
1278
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTCAGCCTTT GATATGTCCC ATGGGTTTTT TCCCAGGGAA CCAATCTGTC
121CTTTTGAAGA AAAGACAAAG ATAGGAACGA TGGTAGAGGA CCACCGGTCA AATTCTTACC
181AGGATTCAGT GACGTTTGAT GATGTGGCTG TGGAGTTCAC CCCAGAGGAG TGGGCTTTAC
241TGGACACAAC TCAGAAATAC CTCTACAGAG ATGTGATGCT GGAGAACTAC ATGAACCTGG
301CCTCTGTGGA TTTCTTTTTC TGCTTAACTT CAGAATGGGA AATACAACCT AGAACCAAAC
361GGTCATCACT TCAGCAGGGT TTTTTGAAGA ATCAAATATT CACTGGGATA CAAATGCAGA
421CAAGAAGCTA CAGTGGATGG AAACTCTGTG AGAATTGTGG AGAGGTCTTC AGTGAACAGT
481TTTGCCTTAA GACACACATG AGAGCTCAGA ATGGAGGGAA CACTTTTGAG GGTAATTGTT
541ATGGAAAAGA CAGCATCAGT GTGCACAAGG AAGCCTCTAT TGGACAAGAA CTTTCCAAAT
601TTAATCCATG TGGAAAAGTC TTCACCTTAA CTCCAGGCCT TGCTGTGCAT CTTGAAATTC
661TCAATGGAAG ACAACCCTAC AAATGTAAGG AATGTGGAAA AGGCTTTAAG TATTTTGCAA
721GCCTTGATAA TCACATGGGA ATCCACATTG GAGAGAAACT CTGTGAATTT CAGGAATGTG
781AGAGAGCCAT CACAACTTCC TCACACTTAA AGCAGTGTGT AGCAGTTCAT ACTGGAAAGA
841AATCCGAAAA GACTAAGAAC TGTGGGAAAT CCTTCACTAA TTTTTCTCAA CTTTCTGCAC
901ATGCAAAAAC TCATAAAGGA GAGAAGTCCT TTGAATGTAA AGAATGTGGA AGATCCTTTA
961GAAATTCCTC ATCCTTTAAT GTTCACATTC AAATTCACAC TGGAATAAAA CCACACAAAT
1021GTACGGAATG TGGGAAAGCC TTCACTAGAT CAACTCACCT TACTCAACAT GTAAGAACTC
1081ACACTGGAAT AAAACCCTAT GAATGTAAGG AATGTGGCCA AGCCTTCACT CAGTACACGG
1141GCCTTGCTAT ACACATACGA AATCACACTG GAGAGAAACC CTATCAGTGT AAGGAATGTG
1201GGAAAGCCTT CAATAGATCT TCAACGCTTA CTCAACATAG AAGAATTCAC ACAGGAGAGA
1261AGCCTTATGA ATGTGTTGAA TGTGGGAAGA CCTTCATTAC TTCTTCCCAT CGTAGTAAAC
1321ATTTGAAAAC TCACAGTGGA GAAAGGTTGC CAACTTTCTT GTACAAAGTt ggcattataa
1381gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)

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