Construct: ORF ccsbBroadEn_03499
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011539.1_s300c1, BRDN0000396400
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TIPIN (54962)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54962 | TIPIN | TIMELESS interacting protein | NM_017858.3 | 99.8% | 99.6% | 158G>C |
| 2 | human | 54962 | TIPIN | TIMELESS interacting protein | XM_005254522.4 | 99.8% | 99.6% | 158G>C |
| 3 | human | 54962 | TIPIN | TIMELESS interacting protein | XM_006720594.3 | 99.8% | 99.6% | 158G>C |
| 4 | human | 54962 | TIPIN | TIMELESS interacting protein | XM_011521743.1 | 99.8% | 99.6% | 158G>C |
| 5 | human | 54962 | TIPIN | TIMELESS interacting protein | XM_017022390.1 | 99.8% | 99.6% | 158G>C |
| 6 | human | 54962 | TIPIN | TIMELESS interacting protein | XM_024449971.1 | 99.8% | 99.6% | 158G>C |
| 7 | human | 54962 | TIPIN | TIMELESS interacting protein | XM_024449972.1 | 99.8% | 99.6% | 158G>C |
| 8 | human | 54962 | TIPIN | TIMELESS interacting protein | XM_005254521.3 | 86.3% | 86.2% | 1_141del;299G>C |
| 9 | human | 54962 | TIPIN | TIMELESS interacting protein | NM_001289986.1 | 66.4% | 66.4% | 0_1ins303 |
| 10 | human | 54962 | TIPIN | TIMELESS interacting protein | XM_017022391.2 | 66.4% | 66.4% | 0_1ins303 |
| 11 | human | 54962 | TIPIN | TIMELESS interacting protein | XM_024449973.1 | 66.4% | 66.4% | 0_1ins303 |
| 12 | human | 54962 | TIPIN | TIMELESS interacting protein | XM_024449974.1 | 66.4% | 66.4% | 0_1ins303 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 969
- ORF length:
- 903
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT AGAACCACAG GAGAATGGCG TGATTGACCT ACCAGATTAT GAGCATGTAG 121 AAGATGAAAC TTTTCCTCCT TTCCCACCTC CAGCCTCTCC AGAGAGACAA GATGGTGAAG 181 GAACTGAGCC TGATGAAGAG TCAGGAAATG GAGCACCTGT TCCTGTACCT CCAAAGAGAA 241 CAGTTAAAAG AAATATACCC AAGCTGGATG CTCAGAGATT AATTTCAGAG AGAGGACTTC 301 CAGCCTTAAG GCATGTATTT GATAAGGCAA AATTCAAAGG TAAAGGTCAT GAGGCTGAAG 361 ACTTGAAGAT GCTAATCAGA CACATGGAGC ACTGGGCACA TAGGCTATTC CCTAAACTGC 421 AGTTTGAGGA TTTTATTGAC AGAGTTGAAT ACCTGGGAAG TAAAAAGGAA GTTCAGACCT 481 GTTTAAAACG AATTCGACTT GATCTCCCTA TTTTACATGA AGATTTTGTT AGCAATAATG 541 ATGAAGTTGC GGAGAATAAT GAACATGATG TCACTTCTAC TGAATTAGAT CCCTTTCTGA 601 CAAACTTATC TGAAAGTGAG ATGTTTGCTT CTGAGTTAAG TAGAAGCCTA ACAGAAGAGC 661 AACAACAAAG AATTGAGAGA AATAAACAAC TGGCCTTGGA AAGAAGGCAG GCAAAGCTGC 721 TGAGTAATAG TCAGACCCTA GGAAATGATA TGTTAATGAA TACACCCAGG GCACACACGG 781 TTGAAGAGGT TAATACTGAT GAGGATCAAA AGGAGGAGTC AAATGGATTA AACGAAGACA 841 TTCTGGACAA TCCATGTAAT GATGCTATTG CCAATACTTT AAATGAAGAG GAAACACTGC 901 TGGACCAGTC TTTTAAAAAT GTGCAACAGC AACTTGATGC TACATCCAGA AATATTACTG 961 AAGCTAGATA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 1021 tttgttgcaa cgaac