Construct: ORF ccsbBroadEn_03542

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013897.1_s300c1, BRDN0000456669
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TBCCD1 (55171)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55171 TBCCD1 TBCC domain containing 1 NM_001134415.1 100% 100%
2 human 55171 TBCCD1 TBCC domain containing 1 NM_018138.5 100% 100%
3 human 55171 TBCCD1 TBCC domain containing 1 NM_001286749.2 81.8% 80.2% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1737
ORF length:
1671
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA TCAGTCCAGA GTTCTCCTCT GGGTGAAAGC AGAACCCTTT ATAGTGGGTG
121CCTTGCAGGT CCCCCCTCCA TCCAAGTTTA GTCTTCACTA TCTCAGGAAG ATATCCACCT
181ATGTGCAAAT CCGGGCCACA GAAGGAGCTT ACCCGCGCCT CTACTGGTCT ACATGGAGGC
241ACATCGCTTG TGGGAAGCTG CAGTTGGCCA AGGACCTGGC GTGGCTTTAC TTCGAAATAT
301TTGATAGTCT TTCAATGAAG ACACCTGAGG AGCGCCTGGA ATGGTCTGAG GTTCTGTCCA
361ACTGCATGTC TGAGGAGGAA GTTGAAAAGC AGAGAAATCA GCTTTCAGTG GACACGCTAC
421AGTTTCTGCT CTTCTTATAC ATTCAACAGT TGAACAAGGT CTCCCTAAGG ACATCTTTGA
481TTGGCGAAGA GTGGCCCAGT CCCAGAAACA AATCTCAGTC TCCTGACCTG ACTGAAAAAT
541CTAATTGTCA TAATAAGAAC TGGAATGATT ACAGTCACCA AGCTTTTGTC TATGATCATC
601TGTCTGATCT CCTCGAGCTG CTTTTAGATC CAAAACAACT CACTGCATCA TTTCATTCAA
661CCCATAGTAG TCTAGTGTCT CGAGAAGCTG TTGTGGCGCT CAGCTTCCTT ATTGAAGGTA
721CAATAAGTAG AGCCAGGAAG ATCTATCCAC TTCATGAACT TGCACTGTGG CAACCACTGC
781ATGCAGATAG TGGCTTCTCA AAGATCTCTA AGACTTTCTC TTTCTACAAA CTGGAAACCT
841GGTTGAGGTC CTGTTTGACT GGGAATCCAT TTGGTACATC AGCTTGCCTC AAGTCTGGAA
901AGAAATTGGC TTGGGCTCAT CAAGTTGAAG GGACCACCAA AAGAGCTAAG ATTGCTTGTA
961ATACTCATGT GGCCCCTAGG ATGCACCGAC TGGTAGTGAT GAGCCAGGTT TACAAGCAGA
1021CACTGGCTAA GAGCTCAGAC ACTCTGGCGG GGGCACATGT AAAGATTCAT CGTTGCAACG
1081AATCTTTTAT ATATCTGCTC TCTCCCTTAC GATCTGTGAC AATTGAGAAG TGCAGGAATA
1141GCATCTTTGT CTTGGGCCCT GTAGGGACTA CACTTCACCT CCACAGTTGT GACAATGTTA
1201AAGTCATTGC TGTTTGCCAT CGTTTGTCCA TCTCTTCTAC AACAGGTTGC ATCTTTCACG
1261TTCTTACGCC TACACGCCCA CTTATTCTCT CTGGGAACCA GACAGTAACT TTTGCCCCTT
1321TTCATACACA TTACCCAATG CTAGAGGACC ATATGGCCAG GACTGGCCTT GCTACAGTGC
1381CTAACTATTG GGATAATCCA ATGGTTGTGT GCAGAGAGAA CAGCGACACA AGAGTCTTCC
1441AGCTTTTACC ACCTTGTGAA TTCTATGTAT TTATTATTCC CTTTGAAATG GAAGGGGACA
1501CAACAGAGAT ACCCGGGGGT CTTCCATCTG TATATCAGAA AGCACTGGGT CAAAGAGAAC
1561AGAAGATACA GATCTGGCAG AAAACTGTGA AGGAGGCTCA TTTGACAAAG GATCAAAGGA
1621AGCAGTTCCA GGTACTGGTA GAGAACAAGT TTTATGAATG GTTGATTAAT ACAGGACATC
1681GCCAACAGCT GGACAGCCTT GTACCCCCTG CAGCAGGCTC CAAACAAGCA GCTGGATACC
1741CAACTTTCTT GTACAAAGTT GGcattataa gaaagcattg cttatcaatt tgttgcaacg
1801aac

Download FASTA (ORF) (Full)