Construct: ORF ccsbBroadEn_03572
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014087.1_s300c1, BRDN0000386866
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C4orf19 (55286)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55286 | C4orf19 | chromosome 4 open reading f... | NM_001104629.2 | 100% | 100% | |
| 2 | human | 55286 | C4orf19 | chromosome 4 open reading f... | NM_018302.2 | 100% | 100% | |
| 3 | human | 55286 | C4orf19 | chromosome 4 open reading f... | XM_011513712.2 | 100% | 100% | |
| 4 | human | 55286 | C4orf19 | chromosome 4 open reading f... | XM_011513713.2 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1008
- ORF length:
- 942
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG GTGCAGGTGC TGTAAAATAA TACAAAGCTA TCTCTTTGAT CCAGTTCAAG 121 TGCCCTCTCC TGGCTATGTC AATGAAGTCA ACAGCTGCAA GCTAGATGAA GACGACACTG 181 ATAAATTAAA AGGCAAATGG AGCAGTGAAG TCTTGGTGCA GAAAAATGAC CCTCAGAGGC 241 AGGGCTCAAA GAAGACTGAG AGCAGCAGCA GGACAGCTGA TCCATGGGAG CCCTGCTGGC 301 CTCACCAAGG GCCGCTCCCA CAGGGGGACG CTGGAGGGGA ACACCATGCC TGCGGTGTCA 361 ACGGCATCGG CCCTGCTGCC ACTCCACAGC CCACTGGGAA TTCCAGCCCC ACCCAGGATG 421 ACAGGGGCTC CTGGGCCAGT ACTGCAAATA CTGTTCCCCC AACTCAACCC TTCCTGGAAG 481 GAGGGGGCAC CAGGAAACAG GACTGTGTGC TGCTGGCCTC AGAAGGGACC CAAGTCATGA 541 GAAATGGAGA CTCCAGAGCT CCTTCTGAGG CAGAAAGTTT TGCCTTGGAA GTACAAGACC 601 ATGTCTTCCA GATACCAGCC CCAGATTACC TTCAGCATTG GGGCCCAGCT GGAGACAACG 661 TTGATCATAA TGAAAAGGAC TGTGTTTTCA AGAACCATAC TGAGGATGAA TCCCTAGAGG 721 GAATTCAGCC CCCAGTGGGG GAGCATGGTT TGAATACGCC CTTCTCTGTG AGGAGAAGCT 781 GGGATTCATT GAATGAGGAT GTGGAAACAG AAGTTCTAAG CATCTGCTTT AATGAGAAGG 841 GTCCTGTTCA TGCCATGCCT GTGGTTGACT CAGGAAACAG GCAGGAGGAT ACCCATGGCT 901 CCGATGGAGA TGGGGATGGG GAGATTGTGG ACGAGGATGC AGCGGTGGCG GAGGCCCTTG 961 CAGCTTTAGA AGCTGCTACT GCAGGAGAAG ATTTGGATGA GACTGATTAC CCAACTTTCT 1021 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac