Construct: ORF ccsbBroadEn_03606
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004026.1_s300c1, BRDN0000390199
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ITLN1 (55600)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55600 | ITLN1 | intelectin 1 | NM_017625.3 | 100% | 100% | |
| 2 | human | 142683 | ITLN2 | intelectin 2 | XM_024453321.1 | 81.7% | 80.8% | (many diffs) |
| 3 | human | 142683 | ITLN2 | intelectin 2 | NM_080878.3 | 81.5% | 80.9% | (many diffs) |
| 4 | human | 142683 | ITLN2 | intelectin 2 | XM_011509210.1 | 81.5% | 80.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1005
- ORF length:
- 939
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA CCAACTCAGC TTCCTGCTGT TTCTCATAGC GACCACCAGA GGATGGAGTA 121 CAGATGAGGC TAATACTTAC TTCAAGGAAT GGACCTGTTC TTCGTCTCCA TCTCTGCCCA 181 GAAGCTGCAA GGAAATCAAA GACGAATGTC CTAGTGCATT TGATGGCCTG TATTTTCTCC 241 GCACTGAGAA TGGTGTTATC TACCAGACCT TCTGTGACAT GACCTCTGGG GGTGGCGGCT 301 GGACCCTGGT GGCCAGCGTG CACGAGAATG ACATGCGTGG GAAGTGCACG GTGGGCGATC 361 GCTGGTCCAG TCAGCAGGGC AGCAAAGCAG TCTACCCAGA GGGGGACGGC AACTGGGCCA 421 ACTACAACAC CTTTGGATCT GCAGAGGCGG CCACGAGCGA TGACTACAAG AACCCTGGCT 481 ACTACGACAT CCAGGCCAAG GACCTGGGCA TCTGGCACGT GCCCAATAAG TCCCCCATGC 541 AGCACTGGAG AAACAGCTCC CTGCTGAGGT ACCGCACGGA CACTGGCTTC CTCCAGACAC 601 TGGGACATAA TCTGTTTGGC ATCTACCAGA AATATCCAGT GAAATATGGA GAAGGAAAGT 661 GTTGGACTGA CAACGGCCCG GTGATCCCTG TGGTCTATGA TTTTGGCGAC GCCCAGAAAA 721 CAGCATCTTA TTACTCACCC TATGGCCAGC GGGAATTCAC TGCGGGATTT GTTCAGTTCA 781 GGGTATTTAA TAACGAGAGA GCAGCCAACG CCTTGTGTGC TGGAATGAGG GTCACCGGAT 841 GTAACACTGA GCACCACTGC ATTGGTGGAG GAGGATACTT TCCAGAGGCC AGTCCCCAGC 901 AGTGTGGAGA TTTTTCTGGT TTTGATTGGA GTGGATATGG AACTCATGTT GGTTACAGCA 961 GCAGCCGTGA GATAACTGAG GCAGCTGTGC TTCTATTCTA TCGTTGCCCA ACTTTCTTGT 1021 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c