Construct: ORF ccsbBroadEn_03633
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009014.1_s300c1, BRDN0000395661
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- YJU2 (55702)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55702 | YJU2 | YJU2 splicing factor homolog | NM_018074.6 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1035
- ORF length:
- 969
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC GGAGCGAAAA GTATTAAACA AATACTACCC GCCGGACTTT GACCCATCAA 121 AGATCCCCAA ACTCAAGCTC CCCAAAGACC GGCAGTACGT GGTGCGGCTG ATGGCCCCCT 181 TCAACATGAG GTGTAAGACG TGCGGAGAAT ACATCTACAA GGGGAAGAAA TTCAATGCTC 241 GGAAGGAGAC GGTGCAGAAC GAGGTCTACC TGGGCCTGCC CATCTTCCGC TTTTACATCA 301 AGTGCACGCG CTGCCTGGCA GAGATCACCT TCAAGACAGA CCCTGAAAAC ACAGACTACA 361 CCATGGAGCA TGGAGCCACG CGGAATTTCC AGGCTGAGAA GCTCCTGGAG GAGGAGGAGA 421 AGAGGGTGCA GAAGGAGCGG GAGGACGAGG AGCTGAACAA CCCCATGAAG GTGCTGGAGA 481 ACCGGACCAA GGACTCCAAG CTGGAGATGG AGGTGCTGGA GAACCTCCAG GAGCTGAAAG 541 ACCTGAACCA GCGGCAGGCG CACGTGGACT TCGAGGCTAT GCTGAGGCAG CACCGCCTGT 601 CGGAGGAGGA GCGGCGGAGG CAGCAGCAGG AGGAGGACGA GCAGGAGACC GCGGCCCTGT 661 TGGAGGAAGC CAGAAAGCGA AGACTGCTGG AGGACTCCGA CTCAGAGGAT GAGGCTGCTC 721 CCTCGCCCCT GCAGCCAGCC CTTCGGCCCA ACCCCACCGC CATCCTGGAT GAGGCCCCAA 781 AGCCCAAGAG GAAGGTGGAG GTCTGGGAGC AGAGCGTTGG CAGCCTGGGC AGCCGGCCCC 841 CGCTGTCGAG GCTGGTCGTG GTGAAGAAGG CAAAGGCCGA CCCGGACTGC AGCAACGGGC 901 AGCCTCAGGC GGCCCCCACC CCAGGAGCCC CGCAGAACAG GAAGGAGGCC AACCCTACAC 961 CCCTGACGCC TGGCGCGTCC TCCCTGAGCC AACTGGGTGC ATACCTGGAC AGTGACGACA 1021 GCAACGGCAG CAACTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1081 tatcaatttg ttgcaacgaa c