Construct: ORF ccsbBroadEn_03645

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015666.1_s300c1, BRDN0000385244
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PARVA (55742)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55742 PARVA parvin alpha NM_018222.5 100% 100%
2 human 55742 PARVA parvin alpha XM_005253015.3 88% 87.9% 0_1ins133;2delT
3 mouse 57342 Parva parvin, alpha NM_020606.5 90.2% 98.3% (many diffs)
4 mouse 57342 Parva parvin, alpha XM_006508050.1 81% 87.1% (many diffs)
5 mouse 57342 Parva parvin, alpha XM_006508051.1 77.5% 84.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1182
ORF length:
1116
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CACCTCCCCG CAGAAGTCGC CTTCTGTCCC CAAGTCTCCC ACTCCCAAGT
121CGCCCCCGTC CCGCAAGAAA GATGATTCCT TCTTGGGGAA ACTCGGAGGG ACCCTGGCCC
181GGAGGAAGAA AGCCAAGGAG GTGTCCGAGC TGCAGGAGGA GGGAATGAAC GCCATCAACC
241TGCCCCTCAG CCCAATTCCC TTTGAGCTGG ACCCCGAGGA CACGATGCTG GAGGAGAATG
301AGGTGCGAAC AATGGTGGAT CCAAACTCAC GCAGTGACCC CAAGCTTCAA GAACTGATGA
361AGGTATTAAT TGACTGGATT AATGATGTGT TGGTTGGAGA AAGAATCATT GTGAAAGACC
421TAGCTGAAGA TTTGTATGAT GGACAAGTCC TGCAGAAGCT TTTCGAGAAA CTGGAGAGTG
481AGAAGCTAAA TGTGGCTGAG GTCACCCAGT CAGAGATTGC TCAGAAGCAA AAACTGCAGA
541CTGTCCTGGA GAAGATCAAT GAAACCCTGA AACTTCCTCC CAGGAGCATC AAGTGGAATG
601TGGATTCTGT TCATGCCAAG AGCCTGGTGG CCATCTTACA CCTGCTCGTT GCTCTGTCTC
661AGTATTTCCG CGCACCAATT CGACTCCCAG ACCATGTTTC CATCCAAGTG GTTGTGGTCC
721AGAAACGAGA AGGAATCCTC CAGTCTCGGC AAATCCAAGA GGAAATAACT GGTAACACAG
781AGGCTCTTTC CGGGAGGCAT GAACGTGATG CCTTTGACAC CTTGTTCGAC CATGCCCCAG
841ACAAGCTGAA TGTGGTGAAA AAGACACTCA TCACTTTCGT GAACAAGCAC CTGAATAAAC
901TGAACCTGGA GGTCACAGAA CTGGAAACCC AGTTTGCAGA TGGGGTGTAC CTGGTGCTGC
961TCATGGGGCT CCTGGAGGGC TACTTTGTGC CCCTGCACAG CTTCTTCCTG ACCCCGGACA
1021GCTTTGAACA GAAGGTCTTG AATGTCTCCT TTGCCTTTGA GCTCATGCAA GATGGAGGGT
1081TGGAAAAGCC AAAACCGCGG CCAGAAGACA TAGTCAACTG TGACCTGAAA TCTACACTAC
1141GAGTGTTGTA CAACCTCTTC ACCAAGTACC GTAACGTGGA GTGCCCAACT TTCTTGTACA
1201AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)