Construct: ORF ccsbBroadEn_03664
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017437.1_s300c1, BRDN0000389950
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BRK1 (55845)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55845 | BRK1 | BRICK1 subunit of SCAR/WAVE... | NM_018462.5 | 100% | 100% | |
| 2 | mouse | 101314 | Brk1 | BRICK1, SCAR/WAVE actin-nuc... | NM_133937.1 | 94.6% | 98.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 291
- ORF length:
- 225
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGGACAGGAG GATCCGGTGC AGCGGGAGAT TCACCAGGAC TGGGCTAACC 121 GGGAGTACAT TGAGATAATC ACCAGCAGCA TCAAGAAAAT CGCAGACTTT CTCAACTCGT 181 TCGATATGTC TTGTCGTTCA AGACTTGCAA CACTAAACGA GAAATTGACA GCCCTTGAAC 241 GGAGAATAGA GTACATTGAA GCTCGGGTGA CAAAAGGTGA GACACTCACC TACCCAACTT 301 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac