Construct: ORF ccsbBroadEn_03668
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012236.1_s300c1, BRDN0000388645
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PSENEN (55851)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55851 | PSENEN | presenilin enhancer, gamma-... | NM_001281532.3 | 100% | 100% | |
| 2 | human | 55851 | PSENEN | presenilin enhancer, gamma-... | NM_172341.4 | 100% | 100% | |
| 3 | mouse | 66340 | Psenen | presenilin enhancer gamma s... | NM_025498.2 | 91% | 96% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 369
- ORF length:
- 303
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA CCTGGAGCGA GTGTCCAATG AGGAGAAATT GAACCTGTGC CGGAAGTACT 121 ACCTGGGGGG GTTTGCTTTC CTGCCTTTTC TCTGGTTGGT CAACATCTTC TGGTTCTTCC 181 GAGAGGCCTT CCTTGTCCCA GCCTACACAG AACAGAGCCA AATCAAAGGC TATGTCTGGC 241 GCTCAGCTGT GGGCTTCCTC TTCTGGGTGA TAGTGCTCAC CTCCTGGATC ACCATCTTCC 301 AGATCTACCG GCCCCGCTGG GGTGCCCTTG GGGACTACCT CTCCTTCACC ATACCCCTGG 361 GCACCCCCTG CCCAACTTTC TTGTACAAAA GTggcattat aagaaagcat tgcttatcaa 421 tttgttgcaa cgaac