Construct: ORF ccsbBroadEn_03678
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000825.1_s300c1, BRDN0000395895
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF302 (55900)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55900 | ZNF302 | zinc finger protein 302 | NM_001012320.2 | 100% | 100% | |
| 2 | human | 55900 | ZNF302 | zinc finger protein 302 | NM_001289183.1 | 100% | 100% | |
| 3 | human | 55900 | ZNF302 | zinc finger protein 302 | NM_001289186.1 | 100% | 100% | |
| 4 | human | 55900 | ZNF302 | zinc finger protein 302 | NM_001289187.2 | 100% | 100% | |
| 5 | human | 55900 | ZNF302 | zinc finger protein 302 | NM_018443.3 | 100% | 100% | |
| 6 | human | 55900 | ZNF302 | zinc finger protein 302 | NM_001289182.1 | 99.7% | 99.7% | 129_131delAGC |
| 7 | human | 55900 | ZNF302 | zinc finger protein 302 | NM_001289184.1 | 99.7% | 99.7% | 129_131delAGC |
| 8 | human | 55900 | ZNF302 | zinc finger protein 302 | NM_001289185.1 | 99.7% | 99.7% | 129_131delAGC |
| 9 | human | 55900 | ZNF302 | zinc finger protein 302 | XM_017026982.1 | 99.7% | 99.7% | 129_131delAGC |
| 10 | human | 55900 | ZNF302 | zinc finger protein 302 | XM_024451604.1 | 99.7% | 99.7% | 129_131delAGC |
| 11 | human | 55900 | ZNF302 | zinc finger protein 302 | NM_001289181.1 | 89.9% | 89.3% | (many diffs) |
| 12 | human | 55900 | ZNF302 | zinc finger protein 302 | XM_017026979.1 | 89.9% | 89.3% | (many diffs) |
| 13 | human | 55900 | ZNF302 | zinc finger protein 302 | XM_017026980.2 | 89.9% | 89.3% | (many diffs) |
| 14 | human | 55900 | ZNF302 | zinc finger protein 302 | XM_017026981.2 | 89.9% | 89.3% | (many diffs) |
| 15 | human | 55900 | ZNF302 | zinc finger protein 302 | XM_017026978.1 | 89.7% | 89.1% | (many diffs) |
| 16 | human | 55900 | ZNF302 | zinc finger protein 302 | XM_024451603.1 | 89.7% | 89.1% | (many diffs) |
| 17 | human | 339318 | ZNF181 | zinc finger protein 181 | XM_006723184.3 | 67.2% | 63.7% | (many diffs) |
| 18 | human | 339318 | ZNF181 | zinc finger protein 181 | XM_005258851.3 | 67.1% | 63.6% | (many diffs) |
| 19 | human | 339318 | ZNF181 | zinc finger protein 181 | NM_001145665.2 | 66.8% | 63.3% | (many diffs) |
| 20 | human | 339318 | ZNF181 | zinc finger protein 181 | XM_005258850.2 | 66.8% | 63.3% | (many diffs) |
| 21 | human | 339318 | ZNF181 | zinc finger protein 181 | XM_017026739.2 | 66.8% | 63.3% | (many diffs) |
| 22 | human | 339318 | ZNF181 | zinc finger protein 181 | NM_001029997.4 | 66.7% | 63.2% | (many diffs) |
| 23 | human | 339318 | ZNF181 | zinc finger protein 181 | XM_005258849.2 | 66.7% | 63.2% | (many diffs) |
| 24 | human | 339318 | ZNF181 | zinc finger protein 181 | XM_006723183.3 | 66.7% | 63.2% | (many diffs) |
| 25 | human | 339318 | ZNF181 | zinc finger protein 181 | XM_017026740.1 | 64.5% | 61.3% | (many diffs) |
| 26 | human | 100129800 | ZNF807P | zinc finger protein 807, ps... | NR_146880.1 | 44.9% | (many diffs) | |
| 27 | human | 55900 | ZNF302 | zinc finger protein 302 | NR_110322.1 | 44.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1263
- ORF length:
- 1197
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC TCAGGTGACA TTTAGTGATG TGGCTATAGA CTTCTCTCAT GAAGAGTGGG 121 CATGCCTAGA TTCTGCTCAG AGGGACTTAT ACAAGGATGT GATGGTCCAG AATTATGAGA 181 ACCTGGTCTC TGTAGGTCTT TCCGTAACTA AGCCATATGT GATCATGTTA TTGGAGGATG 241 GAAAAGAGCC CTGGATGATG GAGAAAAAAC TGTCAAAAGA TTGGGAATCA AGATGGGAAA 301 ACAAGGAATT ATCAACAAAG AAGGATATTT ATGATGAAGA TTCACCCCAA CCAGTAACAA 361 TGGAAAAAGT TGTAAAACAA AGTTATGAAT TTTCAAATTC TAATAAGAAT TTGGAATATA 421 CAGAATGCGA CACATTTAGA AGCACCTTTC ATTCAAAGTC TACTCTTTCT GAACCACAAA 481 ACAATTCTGC TGAAGGGAAT TCACACAAAT ATGATATATT AAAGAAGAAT TTATCAAAAA 541 AGTCAGTTAT AAAAAGTGAG AGAATAAATG GTGGAAAGAA ACTTTTAAAT TCTAATAAAA 601 GTGGGGCAGC CTTCAACCAG AGCAAATCTC TTACCCTTCC CCAGACTTGT AATAGAGAGA 661 AAATCTATAC ATGCAGTGAA TGTGGGAAAG CCTTTGGCAA ACAGTCAATC CTCAGTCGCC 721 ACTGGAGAAT TCATACAGGA GAGAAGCCCT ATGAATGTCG TGAATGTGGG AAGACTTTTA 781 GCCATGGTTC ATCCCTTACA CGACATCAGA TAAGCCATAG TGGAGAGAAA CCTTACAAAT 841 GCATTGAATG TGGGAAGGCC TTTAGCCATG GCTCATCACT TACTAACCAT CAGAGCACTC 901 ACACGGGAGA GAAACCGTAT GAATGTATGA ACTGTGGAAA GTCTTTTAGT CGTGTGTCCC 961 TTCTCATTCA GCATCTAAGA ATTCATACGC AAGAAAAACG CTATGAGTGT CGTATATGTG 1021 GAAAGGCCTT CATTCATAGT TCGTCTCTCA TTCACCATCA GAAAAGCCAT ACTGGAGAGA 1081 AGCCTTATGA ATGTAGAGAA TGTGGGAAAG CTTTCTGCTG TAGCTCACAC CTTACTCAAC 1141 ATCAAAGAAT TCACAGTATG AAGAAAAAAT ATGAATGCAA CAAATGTCTC AAGGTCTTTA 1201 GTAGCTTCTC ATTTCTTGTT CAACATCAGA GTATTCATAC TGAAGAAAAA CCGTTTGAAG 1261 TTTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 1321 gcaacgaac