Construct: ORF ccsbBroadEn_03706

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006502.1_s300c1, BRDN0000391289
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCDHA12 (56137)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56137 PCDHA12 protocadherin alpha 12 NM_031864.3 100% 100%
2 human 56137 PCDHA12 protocadherin alpha 12 NM_018903.4 83.9% 83.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2445
ORF length:
2376
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGTGATTATC GGACCAAGAG GCCCGGGATC CCAGCGTCTG CTGCTCTCGC
121TTCTGCTCCT TGCAGCCTGG GAGGTGGGGA GCGGCCAGCT CCACTACTCC GTCTACGAGG
181AGGCCAAACA CGGCACCTTC GTGGGCCGCA TCGCTCAGGA CCTGGGGCTG GAGCTGGCGG
241AGCTGGTGCC GCGCCTGTTC CGGGTGGCGT CCAAAAGACA CGGGGACCTT CTGGAGGTAA
301ATCTGCAGAA TGGCATTTTG TTTGTGAATT CTCGGATCGA CCGCGAGAAG CTGTGCGGGC
361GGAGCGCGGA GTGCAGTATC CACCTGGAGG TGATCGTGGA CAGGCCGCTG CAGGTTTTCC
421ATGTGGACGT GGAGGTGAAG GACATTAACG ACAACCCGCC GGTGTTCAGA GAAAGGGAAC
481AAAAGGTACC TGTTTCTGAA TCTGCGCCTC TGGACTCTCA TTTTCCTCTA GAGGGCGCTT
541CTGATGCGGA TATCGGCGTA AACTCTCTTT TGACCTATGC GTTAAGTCTA AATGAGAATT
601TTGAGCTTAA AATAAAAACA AAAAAAGATA AAAGTATATT GCCTGAATTA GTTCTTCGGA
661AGTTATTGGA CAGAGAGCAA ACGCCAAAAC TCAATTTATT GCTGATGGTA ATCGATGGCG
721GTAAACCAGA ACTAACAGGG TCTGTCCAGA TTCAAATAAC CGTCCTGGAT GTGAATGACA
781ATGGTCCGGC GTTTGATAAG CCCAGCTATA AAGTAGTGTT GTCTGAAAAT GTCCAAAACG
841ACACAAGAGT GATCCAACTA AATGCTTCCG ATCCAGACGA AGGACTTAAT GGAGAAATTT
901CCTATGGGAT CAAAATGATT TTGCCAGTGA GTGAGAAATG TATGTTTTCA ATAAATCCAG
961ACACAGGTGA AATTAGAATT TATGGTGAAC TGGATTTTGA AGAGAATAAT GCCTATGAAA
1021TTCAGGTTAA CGCCATTGAT AAAGGGATTC CTTCCATGGC AGGTCACAGC ATGGTCCTGG
1081TGGAAGTTCT GGACGTGAAT GACAATGTCC CTGAAGTAAT GGTTACTTCA CTGTCGCTCC
1141CTGTGCAAGA GGATGCTCAG GTGGGTACCG TCATTGCCCT GATTAGCGTG TCGGATCGTG
1201ACTCTGGAGC CAATGGACAG GTCATCTGCT CACTGACACC TCATGTTCCC TTCAAGCTGG
1261TGTCCACCTA CAAGAATTAC TACTCGTTGG TGCTGGACAG CGCCCTGGAC CGCGAGAGCG
1321TGTCGGCCTA TGAGCTGGTG GTGACTGCGC GGGATGGGGG CTCGCCTTCG CTGTGGGCCA
1381CGGCTAGAGT GTCCGTGGAG GTGGCCGACG TGAACGACAA TGCGCCTGCG TTCGCGCAGC
1441CCGAGTACAC AGTGTTCGTG AAGGAGAACA ACCCGCCGGG CTGCCACATC TTCACGGTGT
1501CGGCATGGGA CGCGGACGCG CAGAAGAACG CGCTGGTGTC CTACTCGCTG GTGGAGCGGC
1561GGGTGGGCGA GCACGCACTG TCGAGCTACG TGTCGGTGCA CGCGGAGAGC GGCAAGGTGT
1621ACGCGCTGCA GCCGCTAGAC CACGAGGAGC TGGAGCTGCT GCAGTTCCAG GTGAGCGCGC
1681GCGACGCCGG CGTGCCGCCT CTGGGCAGCA ACGTGACGCT GCAGGTGTTC GTGCTGGACG
1741AGAACGACAA CGCGCCGGCA CTGCTGGCGA CTCCGGCTGG CAGCGCAGGA GGCGCAGTTA
1801GCGAGTTGGT ACCGCGGTCG GTGGGTGCGG GCCACGTGGT GGCGAAAGTG CGCGCGGTGG
1861ACGCTGACTC CGGCTATAAC GCTTGGCTGT CCTACGAGTT GCAACCGGCG GCGGTCGGCG
1921CGCACATCCC GTTCCACGTG GGGCTGTACA CTGGCGAGAT CAGCACGACA CGCATCCTGG
1981ATGAGGCGGA CGCTCCGCGC CACCGCCTGC TGGTGCTGGT GAAGGACCAC GGTGAGCCCG
2041CGCTGACGTC CACGGCCACG GTGCTGGTGT CGCTGGTGGA GAACGGCCAG GCCCCAAAGA
2101CGTCGTCGCG GGCCTCAGTG GGCGCTGTGG ATCCCGAAGC GGCTCTGGTG GATATTAACG
2161TGTACCTCAT CATCGCCATC TGTGCGGTGT CCAGCCTGCT GGTGCTCACG CTGCTGCTGT
2221ACACTGCGCT GCGTTGCTCA GCGCCGCCCA CCGTGAGCCG GTGCGCGCCG GGCAAGCCCA
2281CGCTGGTGTG CTCCAGCGCC GTGGGGAGTT GGTCTTACTC GCAGCAGAGG AGGCAGAGGG
2341TGTGCTCTGC AGAGAGCCCG CCCAAGACGG ACCTCATGGC CTTCAGCCCA AGCCTTCAGC
2401TGTCTCGAGA AGATTGTTTA AATCCTCCCA GTGAAGTAAG TTATTTGCCA ACTTTCTTGT
2461ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)