Construct: ORF ccsbBroadEn_03744
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002450.1_s300c1, BRDN0000389408
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TCEAL7 (56849)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56849 | TCEAL7 | transcription elongation fa... | NM_001348258.1 | 100% | 100% | |
| 2 | human | 56849 | TCEAL7 | transcription elongation fa... | NM_152278.5 | 100% | 100% | |
| 3 | mouse | 100040972 | Tceal7 | transcription elongation fa... | NM_001127169.1 | 84.3% | 74% | (many diffs) |
| 4 | mouse | 100040972 | Tceal7 | transcription elongation fa... | XM_006528467.2 | 84.3% | 74% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 366
- ORF length:
- 300
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA AAAACCCTGC AAAGAAAACG AAGGAAAGCC AAAGTGCAGC GTGCCAAAGA 121 GGGAGGAAAA ACGCCCGTAT GGAGAATTTG AACGCCAGCA AACAGAAGGG AATTTTAGAC 181 AGAGGCTGCT TCAGTCTCTC GAAGAATTTA AAGAGGACAT AGACTATAGG CATTTTAAAG 241 ATGAAGAAAT GACAAGGGAG GGAGATGAGA TGGAAAGGTG TTTGGAAGAG ATAAGGGGTC 301 TGAGAAAGAA ATTTAGGGCT CTGCATTCTA ACCATAGGCA TTCTCGGGAC CGTCCTTATC 361 CCATTTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 421 gttgcaacga ac