Construct: ORF ccsbBroadEn_03752

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008976.1_s300c1, BRDN0000388972
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PNO1 (56902)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56902 PNO1 partner of NOB1 homolog NM_020143.4 100% 100%
2 human 56902 PNO1 partner of NOB1 homolog NM_001329916.1 87.6% 83.3% 620_621ins71;663_664ins22
3 human 56902 PNO1 partner of NOB1 homolog NM_001329917.2 83.9% 83.7% (many diffs)
4 human 56902 PNO1 partner of NOB1 homolog NR_138146.1 31.5% 1_105del;606_607ins31;831_2269del
5 mouse 66249 Pno1 partner of NOB1 homolog NM_025443.2 86.1% 91.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
67
ORF end:
823
ORF length:
756
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGGCATGG AATCCGAAAT GGAAACGCAG AGCGCCAGGG CAGAGGAGGG CTTTACCCAG
121GTCACCCGCA AGGGTGGCCG ACGGGCGAAG AAACGACAGG CTGAACAGCT GTCCGCAGCA
181GGAGAGGGCG GGGATGCGGG CCGCATGGAC ACAGAGGAGG CCAGGCCGGC GAAGAGGCCC
241GTCTTCCCAC CCCTCTGTGG GGACGGGCTC CTGAGTGGGA AAGAAGAAAC AAGGAAAATT
301CCAGTCCCAG CTAACAGATA CACACCATTG AAAGAAAACT GGATGAAGAT ATTTACTCCT
361ATTGTGGAAC ATTTGGGACT TCAGATACGC TTTAACTTGA AATCAAGGAA TGTAGAAATC
421AGGACTTGTA AAGAAACCAA GGATGTTAGT GCTCTGACAA AAGCAGCTGA TTTTGTGAAA
481GCTTTTATTC TCGGCTTTCA GGTGGAGGAT GCACTTGCCC TCATCAGGTT GGATGACCTC
541TTCCTAGAGT CTTTTGAAAT TACAGATGTT AAACCCCTAA AGGGAGACCA TCTATCCAGG
601GCAATAGGAA GAATCGCTGG CAAAGGAGGA AAAACCAAAT TCACCATAGA GAATGTGACA
661CGGACAAGGA TAGTTTTGGC TGATGTGAAA GTTCACATCC TTGGCTCCTT CCAAAATATC
721AAGATGGCAA GAACTGCCAT TTGCAACCTA ATCTTGGGAA ATCCTCCTTC CAAGGTTTAT
781GGCAATATTC GAGCTGTGGC TAGCAGATCA GCAGATCGAT TCTGCCCAAC TTTCTTGTAC
841AAAGTtggca ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)

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