Construct: ORF ccsbBroadEn_03853
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002889.1_s300c1, BRDN0000389399
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LSM2 (57819)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57819 | LSM2 | LSM2 homolog, U6 small nucl... | NM_021177.5 | 100% | 100% | |
| 2 | mouse | 27756 | Lsm2 | LSM2 homolog, U6 small nucl... | NM_001110101.2 | 92.2% | 100% | (many diffs) |
| 3 | mouse | 27756 | Lsm2 | LSM2 homolog, U6 small nucl... | NM_001204274.1 | 68.2% | 57.5% | (many diffs) |
| 4 | mouse | 27756 | Lsm2 | LSM2 homolog, U6 small nucl... | NM_030597.3 | 66.6% | 71.7% | (many diffs) |
| 5 | mouse | 27756 | Lsm2 | LSM2 homolog, U6 small nucl... | NM_001204273.1 | 25.5% | 19.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 351
- ORF length:
- 285
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT CTTCTATTCT TTTTTCAAGT CCCTTGTGGG CAAGGATGTG GTCGTGGAAC 121 TAAAGAATGA CCTGAGCATC TGTGGAACCC TCCATTCTGT GGATCAGTAT CTCAACATCA 181 AACTAACTGA CATCAGTGTC ACAGACCCTG AGAAATACCC TCACATGTTA TCAGTGAAGA 241 ACTGCTTCAT TCGGGGCTCA GTGGTCCGAT ACGTGCAGCT GCCAGCAGAT GAGGTCGACA 301 CACAGTTGCT ACAGGATGCG GCAAGGAAGG AAGCCCTGCA GCAGAAACAG TGCCCAACTT 361 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac