Construct: ORF ccsbBroadEn_03898

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011028.1_s300c1, BRDN0000386309
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SMAP1 (60682)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 60682 SMAP1 small ArfGAP 1 NM_021940.5 100% 100%
2 human 60682 SMAP1 small ArfGAP 1 NM_001044305.3 94.2% 94.2% 415_495del
3 human 60682 SMAP1 small ArfGAP 1 XM_011536047.3 93.4% 86.1% (many diffs)
4 human 60682 SMAP1 small ArfGAP 1 NM_001281439.2 92.9% 90.3% (many diffs)
5 human 60682 SMAP1 small ArfGAP 1 NM_001281440.1 88.4% 85.4% (many diffs)
6 human 60682 SMAP1 small ArfGAP 1 XM_011536045.3 88.1% 81.4% (many diffs)
7 human 60682 SMAP1 small ArfGAP 1 XM_011536046.3 88% 86.2% (many diffs)
8 human 60682 SMAP1 small ArfGAP 1 XM_011536048.2 76% 76% 0_1ins255;160_240del
9 human 60682 SMAP1 small ArfGAP 1 XM_017011170.1 76% 76% 0_1ins255;160_240del
10 human 60682 SMAP1 small ArfGAP 1 XM_005248760.5 44.1% 41.2% (many diffs)
11 mouse 98366 Smap1 small ArfGAP 1 NM_028534.3 90.3% 92% (many diffs)
12 mouse 98366 Smap1 small ArfGAP 1 XM_006496362.1 85.1% 86.7% (many diffs)
13 mouse 98366 Smap1 small ArfGAP 1 NM_001290683.1 71.7% 73% (many diffs)
14 mouse 98366 Smap1 small ArfGAP 1 NR_110972.1 57.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1386
ORF length:
1320
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTAGCATGGC GACGCGCTCC TGTCGGGAGA AGGCTCAGAA GCTGAACGAG CAGCACCAGC
121TCATCCTATC CAAGCTTCTG AGGGAGGAGG ACAACAAGTA CTGCGCCGAC TGCGAGGCCA
181AAGGTCCTCG ATGGGCTTCC TGGAATATTG GTGTGTTTAT TTGCATCAGA TGTGCTGGAA
241TTCATAGAAA TCTTGGGGTT CATATATCCA GGGTCAAATC AGTCAACCTA GACCAATGGA
301CAGCAGAACA GATACAGTGC ATGCAAGATA TGGGAAATAC TAAAGCAAGA CTACTCTATG
361AAGCCAATCT TCCAGAGAAC TTTCGAAGAC CACAGACAGA TCAAGCAGTG GAATTTTTCA
421TCAGAGATAA ATATGAAAAG AAGAAATACT ACGATAAAAA TGCCATAGCT ATTACAAATA
481AAGAAAAGGA AAAAAAAAAG GAAGAGAAAA AGAGAGAAAA GGAGCCAGAA AAGCCGGCAA
541AACCACTTAC AGCTGAAAAG CTGCAGAAGA AAGATCAGCA ACTGGAGCCT AAAAAAAGTA
601CCAGCCCTAA AAAAGCTGCG GAGCCCACTG TGGATCTTTT AGGACTTGAT GGCCCTGCTG
661TGGCACCAGT GACCAACGGG AACACAACGG TGCCACCCCT GAACGATGAT CTGGACATCT
721TTGGACCGAT GATTTCTAAT CCCTTACCTG CAACTGTCAT GCCCCCAGCT CAGGGGACAC
781CCTCTGCACC AGCAGCTGCA ACCCTGTCTA CAGTAACATC TGGGGATCTA GATTTATTCA
841CTGAGCAAAC TACAAAATCA GAAGAAGTGG CAAAGAAACA ACTTTCCAAA GACTCCATCT
901TATCTCTGTA TGGCACAGGA ACCATTCAAC AGCAAAGTAC TCCTGGTGTA TTTATGGGAC
961CCACAAATAT ACCATTTACC TCACAAGCAC CAGCTGCATT TCAGGGCTTT CCATCGATGG
1021GCGTGCCTGT GCCTGCAGCT CCTGGCCTTA TAGGAAATGT GATGGGACAG AGTCCAAGCA
1081TGATGGTGGG CATGCCCATG CCCAATGGGT TTATGGGAAA TGCACAAACT GGTGTGATGC
1141CACTTCCTCA GAACGTTGTT GGCCCCCAAG GAGGAATGGT GGGACAAATG GGTGCACCCC
1201AGAGTAAGTT TGGCCTGCCG CAAGCTCAGC AGCCCCAGTG GAGCCTCTCA CAGATGAATC
1261AGCAGATGGC TGGCATGAGT ATCAGTAGTG CAACCCCTAC TGCAGGTTTT GGCCAGCCCT
1321CCAGCACAAC AGCAGGATGG TCTGGAAGCT CATCAGGTCA GACTCTCAGC ACACAACTGT
1381GGAAATGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
1441gttgcaacga ac

Download FASTA (ORF) (Full)