Construct: ORF ccsbBroadEn_03901

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008620.1_s300c1, BRDN0000455955
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SRR (63826)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 63826 SRR serine racemase NM_021947.3 100% 100%
2 human 63826 SRR serine racemase XM_006721565.3 100% 100%
3 human 63826 SRR serine racemase XM_006721566.3 100% 100%
4 human 63826 SRR serine racemase XM_011523974.3 100% 100%
5 human 63826 SRR serine racemase NM_001304803.1 56.1% 56.1% 0_1ins447
6 mouse 27364 Srr serine racemase NM_001163311.1 88.2% 89.7% (many diffs)
7 mouse 27364 Srr serine racemase NM_013761.4 88.2% 89.7% (many diffs)
8 mouse 27364 Srr serine racemase XM_006533457.3 88.2% 89.7% (many diffs)
9 mouse 27364 Srr serine racemase XM_017314569.1 88.2% 89.7% (many diffs)
10 mouse 27364 Srr serine racemase XM_017314570.1 88.2% 89.7% (many diffs)
11 mouse 27364 Srr serine racemase XM_017314571.1 88.2% 89.7% (many diffs)
12 mouse 27364 Srr serine racemase XM_011249056.2 74.1% 69.9% (many diffs)
13 mouse 27364 Srr serine racemase XM_011249057.2 73.9% 72.3% (many diffs)
14 mouse 27364 Srr serine racemase XM_017314572.1 71.5% 71% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1089
ORF length:
1020
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTGTGCTCAG TATTGCATCT CCTTTGCTGA TGTTGAAAAA GCTCATATCA
121ACATTCGAGA TTCTATCCAC CTCACACCAG TGCTAACAAG CTCCATTTTG AATCAACTAA
181CAGGGCGCAA TCTTTTCTTC AAATGTGAAC TCTTCCAGAA AACAGGATCT TTTAAGATTC
241GTGGTGCTCT CAATGCCGTC AGAAGCTTGG TTCCTGATGC TTTAGAAAGG AAGCCGAAAG
301CTGTTGTTAC TCACAGCAGT GGAAACCATG GCCAGGCTCT CACCTATGCT GCCAAATTGG
361AAGGAATTCC TGCTTATATT GTGGTGCCCC AGACAGCTCC AGACTGTAAA AAACTTGCAA
421TACAAGCCTA CGGAGCGTCA ATTGTATACT GTGAACCTAG TGATGAGTCC AGAGAAAATG
481TTGCAAAAAG AGTTACAGAA GAAACAGAAG GCATCATGGT ACATCCCAAC CAGGAGCCTG
541CAGTGATAGC TGGACAAGGG ACAATTGCCC TGGAAGTGCT GAACCAGGTT CCTTTGGTGG
601ATGCACTGGT GGTACCTGTA GGTGGAGGAG GAATGCTTGC TGGAATAGCA ATTACAGTTA
661AGGCTCTGAA ACCTAGTGTG AAGGTATATG CTGCTGAACC CTCAAATGCA GATGACTGCT
721ACCAGTCCAA GCTGAAGGGG AAACTGATGC CCAATCTTTA TCCTCCAGAA ACCATAGCAG
781ATGGTGTCAA ATCCAGCATT GGCTTGAACA CCTGGCCTAT TATCAGGGAC CTTGTGGATG
841ATATCTTCAC TGTCACAGAG GATGAAATTA AGTGTGCAAC CCAGCTGGTG TGGGAGAGGA
901TGAAACTACT CATTGAACCT ACAGCTGGTG TTGGAGTGGC TGCTGTGCTG TCTCAACATT
961TTCAAACTGT TTCCCCAGAA GTAAAGAACA TTTGTATTGT GCTCAGTGGT GGAAATGTAG
1021ACTTAACCTC CTCCATAACT TGGGTGAAGC AGGCTGAAAG GCCAGCTTCT TATCAGTCTG
1081TTTCTGTTTT GCCAACTTTC TTGTACAAAG TTGGcattat aagaaagcat tgcttatcaa
1141tttgttgcaa cgaac

Download FASTA (ORF) (Full)