Construct: ORF ccsbBroadEn_03916
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006292.1_s300c1, BRDN0000392428
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PRSS22 (64063)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64063 | PRSS22 | serine protease 22 | NM_022119.4 | 100% | 100% | |
| 2 | human | 64063 | PRSS22 | serine protease 22 | XM_005255473.3 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1017
- ORF length:
- 951
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT GGTTTCTGGA GCGCCCCCAG CCCTGGGTGG GGGCTGTCTC GGCACCTTCA 121 CCTCCCTGCT GCTGCTGGCG TCGACAGCCA TCCTCAATGC GGCCAGGATA CCTGTTCCCC 181 CAGCCTGTGG GAAGCCCCAG CAGCTGAACC GGGTTGTGGG CGGCGAGGAC AGCACTGACA 241 GCGAGTGGCC CTGGATCGTG AGCATCCAGA AGAATGGGAC CCACCACTGC GCAGGTTCTC 301 TGCTCACCAG CCGCTGGGTG ATCACTGCTG CCCACTGTTT CAAGGACAAC CTGAACAAAC 361 CATACCTGTT CTCTGTGCTG CTGGGGGCCT GGCAGCTGGG GAACCCTGGC TCTCGGTCCC 421 AGAAGGTGGG TGTTGCCTGG GTGGAGCCCC ACCCTGTGTA TTCCTGGAAG GAAGGTGCCT 481 GTGCAGACAT TGCCCTGGTG CGTCTCGAGC GCTCCATACA GTTCTCAGAG CGGGTCCTGC 541 CCATCTGCCT ACCTGATGCC TCTATCCACC TCCCTCCAAA CACCCACTGC TGGATCTCAG 601 GCTGGGGGAG CATCCAAGAT GGAGTTCCCT TGCCCCACCC TCAGACCCTG CAGAAGCTGA 661 AGGTTCCTAT CATCGACTCG GAAGTCTGCA GCCATCTGTA CTGGCGGGGA GCAGGACAGG 721 GACCCATCAC TGAGGACATG CTGTGTGCCG GCTACTTGGA GGGGGAGCGG GATGCTTGTC 781 TGGGCGACTC CGGGGGCCCC CTCATGTGCC AGGTGGACGG CGCCTGGCTG CTGGCCGGCA 841 TCATCAGCTG GGGCGAGGGC TGTGCCGAGC GCAACAGGCC CGGGGTCTAC ATCAGCCTCT 901 CTGCGCACCG CTCCTGGGTG GAGAAGATCG TGCAAGGGGT GCAGCTCCGC GGGCGCGCTC 961 AGGGGGGTGG GGCCCTCAGG GCACCGAGCC AGGGCTCTGG GGCCGCCGCG CGCTCCTACC 1021 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1081 aac