Construct: ORF ccsbBroadEn_03983
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007762.1_s300c1, BRDN0000398603
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRC19 (64922)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64922 | LRRC19 | leucine rich repeat contain... | NM_022901.3 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1179
- ORF length:
- 1110
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAAAGTCACA GGCATCACAA TCCTCTTTTG GCCCCTCTCC ATGATATTAT 121 TATCAGACAA AATCCAGTCT TCTAAAAGAG AAGTCCAATG TAATTTTACT GAAAAAAATT 181 ATACCTTGAT TCCAGCAGAT ATCAAGAAAG ATGTTACTAT ACTTGATCTC AGTTATAACC 241 AAATTACTCT TAATGGTACA GACACAAGAG TTCTACAGAC ATACTTTTTA CTCACAGAGC 301 TCTATTTGAT TGAGAACAAG GTTACTATCT TACATAATAA CGGTTTTGGT AACCTCTCCA 361 GTCTAGAAAT TTTAAATATC TGTAGAAACT CCATCTATGT AATTCAACAG GGTGCATTTT 421 TAGGCTTAAA TAAACTAAAA CAGTTATATC TCTGCCAAAA CAAAATAGAA CAACTGAATG 481 CTGATGTATT TGTGCCTCTA AGAAGCCTAA AACTTCTGAA TCTGCAAGGC AATTTGATTA 541 GCTATTTGGA TGTACCACCA CTATTTCATC TGGAATTAAT AACTTTATAT GGAAACCTAT 601 GGAACTGCTC TTGCAGTCTA TTTAATTTGC AGAACTGGTT GAACACATCA AATGTGACAT 661 TAGAAAATGA GAACATCACC ATGTGTAGCT ACCCCAACAG CCTGCAGAGC TACAATATCA 721 AAACAGTACC TCATAAGGCT GAATGCCACT CAAAATTTCC TTCATCAGTA ACTGAAGATC 781 TTTATATTCA TTTTCAGCCC ATCAGCAATT CAATATTTAA TAGCTCTTCG AACAACTTAA 841 CAAGAAATTC AGAACATGAA CCTCTTGGAA AAAGTTGGGC TTTTCTTGTT GGTGTTGTTG 901 TCACTGTACT GACGACTTCA CTTCTCATTT TTATTGCTAT CAAATGCCCA ATATGGTACA 961 ATATTCTGCT TAGTTATAAT CATCATCGCC TGGAAGAGCA TGAAGCAGAA ACCTATGAAG 1021 ATGGTTTTAC TGGAAATCCA AGCTCTCTTT CACAGATACC AGAAACAAAC TCTGAAGAAA 1081 CTACAGTAAT ATTTGAACAA TTACATTCAT TTGTGGTAGA TGATGATGGA TTTATTGAAG 1141 ACAAATATAT AGATATCCAT GAATTATGTG AAGAAAATTT GCCAACTTTC TTGTACAAAG 1201 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac