Construct: ORF ccsbBroadEn_04059
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011335.1_s300c1, BRDN0000386363
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MFSD11 (79157)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79157 | MFSD11 | major facilitator superfami... | NM_001242532.4 | 100% | 100% | |
| 2 | human | 79157 | MFSD11 | major facilitator superfami... | NM_001242533.2 | 100% | 100% | |
| 3 | human | 79157 | MFSD11 | major facilitator superfami... | NM_001242534.2 | 100% | 100% | |
| 4 | human | 79157 | MFSD11 | major facilitator superfami... | NM_001242535.2 | 100% | 100% | |
| 5 | human | 79157 | MFSD11 | major facilitator superfami... | NM_001353017.1 | 100% | 100% | |
| 6 | human | 79157 | MFSD11 | major facilitator superfami... | NM_001353018.1 | 100% | 100% | |
| 7 | human | 79157 | MFSD11 | major facilitator superfami... | NM_001353019.1 | 100% | 100% | |
| 8 | human | 79157 | MFSD11 | major facilitator superfami... | NM_024311.4 | 100% | 100% | |
| 9 | human | 79157 | MFSD11 | major facilitator superfami... | XM_011525242.2 | 91% | 87.6% | (many diffs) |
| 10 | human | 79157 | MFSD11 | major facilitator superfami... | XM_011525236.3 | 90.5% | 85.8% | (many diffs) |
| 11 | human | 79157 | MFSD11 | major facilitator superfami... | XM_011525244.2 | 88.7% | 86.8% | (many diffs) |
| 12 | human | 79157 | MFSD11 | major facilitator superfami... | NM_001242536.2 | 88.4% | 88.4% | 339_340ins156 |
| 13 | human | 79157 | MFSD11 | major facilitator superfami... | NM_001242537.2 | 88.4% | 88.4% | 339_340ins156 |
| 14 | human | 79157 | MFSD11 | major facilitator superfami... | XM_011525237.3 | 85.5% | 80.9% | (many diffs) |
| 15 | human | 79157 | MFSD11 | major facilitator superfami... | XM_011525238.3 | 85.5% | 80.9% | (many diffs) |
| 16 | human | 79157 | MFSD11 | major facilitator superfami... | XM_011525239.3 | 85.5% | 80.9% | (many diffs) |
| 17 | human | 79157 | MFSD11 | major facilitator superfami... | XM_011525240.3 | 85.5% | 80.9% | (many diffs) |
| 18 | human | 79157 | MFSD11 | major facilitator superfami... | XM_011525241.3 | 85.5% | 80.9% | (many diffs) |
| 19 | human | 79157 | MFSD11 | major facilitator superfami... | XM_017025065.2 | 85.5% | 80.9% | (many diffs) |
| 20 | human | 79157 | MFSD11 | major facilitator superfami... | XM_024450944.1 | 85.5% | 80.9% | (many diffs) |
| 21 | human | 79157 | MFSD11 | major facilitator superfami... | XM_011525247.2 | 68.2% | 63.7% | (many diffs) |
| 22 | human | 79157 | MFSD11 | major facilitator superfami... | XM_024450946.1 | 56.3% | 49.7% | (many diffs) |
| 23 | human | 79157 | MFSD11 | major facilitator superfami... | NR_148231.1 | 52% | (many diffs) | |
| 24 | human | 79157 | MFSD11 | major facilitator superfami... | NR_148230.1 | 51.8% | (many diffs) | |
| 25 | human | 79157 | MFSD11 | major facilitator superfami... | NR_148236.1 | 51.6% | 1_736del;995_1034del;2124_2609del | |
| 26 | human | 79157 | MFSD11 | major facilitator superfami... | NR_148229.1 | 50.5% | (many diffs) | |
| 27 | human | 79157 | MFSD11 | major facilitator superfami... | NR_148240.1 | 50.1% | 1_736del;1419_1535del;2201_2686del | |
| 28 | human | 79157 | MFSD11 | major facilitator superfami... | NR_148237.1 | 49.9% | (many diffs) | |
| 29 | human | 79157 | MFSD11 | major facilitator superfami... | NR_148235.1 | 49.4% | 1_852del;1111_1150del;2240_2725del | |
| 30 | human | 79157 | MFSD11 | major facilitator superfami... | NR_148242.1 | 49.1% | (many diffs) | |
| 31 | human | 79157 | MFSD11 | major facilitator superfami... | NR_148232.1 | 48% | 1_852del;1535_1651del;2317_2802del | |
| 32 | human | 79157 | MFSD11 | major facilitator superfami... | NR_148238.1 | 47.9% | 1_852del;1287_1288ins59;2141_2626del | |
| 33 | human | 79157 | MFSD11 | major facilitator superfami... | NR_148239.1 | 47.9% | (many diffs) | |
| 34 | human | 79157 | MFSD11 | major facilitator superfami... | NR_148233.1 | 47.7% | (many diffs) | |
| 35 | human | 79157 | MFSD11 | major facilitator superfami... | NR_148234.1 | 47.1% | (many diffs) | |
| 36 | mouse | 69900 | Mfsd11 | major facilitator superfami... | NM_178620.3 | 87.5% | 93% | (many diffs) |
| 37 | mouse | 69900 | Mfsd11 | major facilitator superfami... | XM_006534142.3 | 87.5% | 93% | (many diffs) |
| 38 | mouse | 69900 | Mfsd11 | major facilitator superfami... | XM_006534143.3 | 87.5% | 93% | (many diffs) |
| 39 | mouse | 69900 | Mfsd11 | major facilitator superfami... | XM_006534144.3 | 87.5% | 93% | (many diffs) |
| 40 | mouse | 69900 | Mfsd11 | major facilitator superfami... | XM_017314745.1 | 87.5% | 93% | (many diffs) |
| 41 | mouse | 69900 | Mfsd11 | major facilitator superfami... | XM_006534145.3 | 81.7% | 81.5% | (many diffs) |
| 42 | mouse | 69900 | Mfsd11 | major facilitator superfami... | XM_006534146.3 | 77.2% | 82.1% | (many diffs) |
| 43 | mouse | 69900 | Mfsd11 | major facilitator superfami... | XM_006534148.3 | 46.9% | 48.4% | (many diffs) |
| 44 | mouse | 69900 | Mfsd11 | major facilitator superfami... | XM_017314746.1 | 45.3% | 48.7% | (many diffs) |
| 45 | mouse | 69900 | Mfsd11 | major facilitator superfami... | XM_017314747.1 | 45.3% | 48.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1413
- ORF length:
- 1347
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC CCCGGAATCT AAAAAGCTTT TCAACATCAT TATTTTAGGA GTTGCCTTTA 121 TGTTTATGTT CACTGCCTTT CAAACTTGTG GAAATGTGGC GCAAACTGTC ATCAGGAGCT 181 TAAATAGGAC AGATTTTCAC GGCAGTGGAT ATACCAGCAT GGCTATTATC TATGGAGTGT 241 TCTCTGCTTC AAATTTGATT ACACCGTCAG TGGTTGCCAT TGTAGGACCT CAACTCTCTA 301 TGTTTGCCAG TGGTTTATTT TACAGCATGT ACATTGCCGT TTTCATCCAG CCTTTCCCGT 361 GGTCCTTCTA CACAGCCTCT GTTTTCATTG GAATTGCTGC TGCTGTGCTT TGGACAGCAC 421 AAGGAAACTG CCTGACAATC AATTCGGATG AGCACAGCAT TGGGAGAAAC AGTGGGATTT 481 TCTGGGCACT TCTGCAGTCT AGCTTGTTCT TTGGAAATCT CTACATATAT TTTGCCTGGC 541 AAGGGAAAAC TCAGATATCA GAGAGTGACC GAAGAACAGT GTTTATTGCC CTAACGGTGA 601 TTAGCCTTGT GGGGACAGTT CTATTCTTTC TCATTCGGAA ACCAGATTCT GAAAATGTCC 661 TAGGAGAAGA TGAGTCTTCT GATGACCAGG ACATGGAAGT CAACGAGTCT GCCCAGAACA 721 ATCTGACAAA GGCAGTAGAT GCTTTTAAAA AGTCTTTTAA GTTATGTGTC ACCAAGGAGA 781 TGCTCCTTCT TAGTATTACA ACTGCTTATA CAGGTCTGGA ATTAACTTTC TTCTCTGGTG 841 TATATGGAAC CTGTATTGGT GCTACAAATA AATTTGGAGC AGAAGAGAAA AGCCTTATTG 901 GACTTTCTGG CATTTTCATC GGCATTGGAG AAATTTTAGG TGGAAGCCTC TTCGGCCTGC 961 TGAGCAAGAA CAATCGTTTT GGTAGAAATC CAGTTGTGCT GTTGGGCATC CTGGTGCACT 1021 TCATAGCTTT TTATCTAATA TTTCTCAACA TGCCTGGAGA TGCCCCGATT GCTCCTGTTA 1081 AAGGAACTGA CAGCAGTGCT TACATCAAAT CCAGCAAAGA AGTTGCCATT CTCTGCAGTT 1141 TTCTGTTGGG CCTTGGAGAC AGCTGCTTTA ATACCCAGCT GCTTAGTATC TTGGGCTTTC 1201 TGTATTCTGA AGACAGCGCC CCAGCATTTG CCATCTTCAA GTTTGTTCAG TCTATTTGCG 1261 CAGCCGTGGC ATTTTTCTAC AGCAACTACC TTCTCCTTCA CTGGCAACTC CTGGTCATGG 1321 TGATATTTGG GTTTTTTGGA ACAATTTCTT TCTTCACTGT GGAATGGGAA GCTGCCGCCT 1381 TTGTAGCCCG CGGCTCTGAC TACCGAAGTA TCTGCCCAAC TTTCTTGTAC AAAGTtggca 1441 ttataagaaa gcattgctta tcaatttgtt gcaacgaac