Construct: ORF ccsbBroadEn_04063
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016773.1_s300c1, BRDN0000392178
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C1orf35 (79169)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79169 | C1orf35 | chromosome 1 open reading f... | NM_024319.4 | 100% | 100% | |
| 2 | human | 79169 | C1orf35 | chromosome 1 open reading f... | NR_130975.2 | 53.6% | 1_98del;628_807del;1068_1470del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 855
- ORF length:
- 789
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT CGGCTCCAGT CGTGGAGGCG TGCGCGGCGG GCAGGACCAG TTCAACTGGG 121 AGGACGTGAA GACTGACAAG CAGCGGGAGA ACTACCTGGG CAACTCGCTG ATGGCGCCGG 181 TAGGCCGCTG GCAGAAGGGC CGCGACCTCA CCTGGTACGC CAAGGGCCGG GCGCCATGCG 241 CGGGCCCGAG CCGCGAGGAG GAACTGGCAG CCGTGCGGGA GGCGGAGCGC GAGGCGCTGC 301 TGGCCGCCCT TGGCTACAAG AACGTGAAGA AGCAGCCCAC GGGCCTGAGC AAGGAGGACT 361 TCGCGGAGGT CTGCAAGCGG GAAGGAGGCG ACCCCGAGGA GAAGGGCGTG GACCGGCTGC 421 TGGGGCTGGG GAGCGCAAGT GGCTCCGTGG GCCGCGTGGC GATGTCCCGA GAGGACAAGG 481 AGGCCGCCAA ACTGGGGCTG TCTGTGTTCA CGCATCACCG CGTAGAGAGC GGCGGGCCCG 541 GGACCTCGGC AGCCTCGGCC AGGAGGAAGC CGCGGGCGGA GGATCAGACG GAAAGCAGTT 601 GTGAGAGCCA CAGGAAAAGC AAGAAGGAGA AGAAGAAAAA GAAAAAGAGG AAACACAAGA 661 AAGAGAAGAA GAAGAAAGAC AAAGAGCACA GGCGGCCAGC TGAGGCCACC TCCTCTCCCA 721 CATCTCCTGA GAGGCCCAGG CACCACCACC ATGACTCCGA CTCCAACTCC CCCTGCTGTA 781 AGAGGAGGAA GCGGGGACAC AGTGGGGACA GGAGGAGCCC GTCTCGCAGG TGGCATGACA 841 GAGGCTCTGA GGCCTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 901 tatcaatttg ttgcaacgaa c