Construct: ORF ccsbBroadEn_04071
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005310.1_s300c1, BRDN0000455937
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OR5H6 (79295)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79295 | OR5H6 | olfactory receptor family 5... | NM_001005479.2 | 95% | 95% | 0_1ins48 |
| 2 | human | 403273 | OR5H14 | olfactory receptor family 5... | NM_001005514.1 | 86.9% | 81.9% | (many diffs) |
| 3 | human | 26341 | OR5H1 | olfactory receptor family 5... | NM_001005338.1 | 82.6% | 76.5% | (many diffs) |
| 4 | human | 403274 | OR5H15 | olfactory receptor family 5... | NM_001005515.1 | 82.3% | 76.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1044
- ORF length:
- 975
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTTCCTTTAC CTTTGCTTCA TTTTTCAGAG GACATGCAGT GAGGAGATGG 121 AAGAGGAAAA TGCAACATTG CTGACAGAGT TTGTTCTCAC AGGATTTTTA CATCAACCTG 181 ACTGTAAAAT ACCGCTCTTC CTGGCATTCT TGGTAATATA TCTCATCACC ATCATGGGGA 241 ATCTTGGTCT AATTGTTCTC ATCTGGAAAG ACCCTCACCT TCATATCCCA ATGTACTTAT 301 TCCTTGGGAG TTTAGCCTTT GTGGATGCTT CGTTATCATC CACAGTGACT CCGAAGATGC 361 TGATCAACTT CTTAGCTAAG AGTAAGATGA TATCTCTCTC TGAATGCATG GTACAATTTT 421 TTTCCCTTGT AACCACTGTA ACCACAGAAT GTTTTCTCTT GGCAACAATG GCATATGATC 481 GCTATGTAGC CATTTGCAAA GCTTTACTTT ATCCAGTCAT TATGACCAAT GAACTATGCA 541 TTCAGCTATT AGTCTTGTCA TTTATAGGTG GCCTTCTTCA TGCTTTAATC CATGAAGCTT 601 TTTCATTCAG ATTAACCTTC TGTAATTCCA ACATAATACA ACACTTTTAC TGTGACATTA 661 TCCCATTGTT AAAGATTTCC TGTACTGATT CCTCTATTAA CTTTCTAATG GTTTTTATTT 721 TCGCAGGTTC TGTTCAAGTT TTTACCATTG GAACTATTCT TATATCTTAT ACAATTATCC 781 TCTTTACAAT CTTAGAAAAG AAGTCTATCA AAGGGATACG AAAAGCTGTC TCCACCTGTG 841 GGGCTCATCT CTTATCTGTA TCTTTATACT ATGGCCCCCT CACCTTCAAA TATCTGGGCT 901 CTGCATCTCC GCAAGCAGAT GACCAAGATA TGATGGAGTC TCTATTTTAC ACTGTCATAG 961 TTCCTTTATT AAATCCCATG ATCTACAGCC TGAGAAACAA GCAAGTAATA GCTTCATTCA 1021 CAAAAATGTT CAAAAGCAAT GTTTTGCCAA CTTTCTTGTA CAAAGTTGGc attataagaa 1081 agcattgctt atcaatttgt tgcaacgaac