Construct: ORF ccsbBroadEn_04086

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003324.1_s300c1, BRDN0000456666
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TCTN1 (79600)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79600 TCTN1 tectonic family member 1 NM_001082537.3 100% 100%
2 human 79600 TCTN1 tectonic family member 1 NM_001082538.3 99.1% 99.1% 1493_1507del
3 human 79600 TCTN1 tectonic family member 1 NM_024549.6 95.3% 92.6% (many diffs)
4 human 79600 TCTN1 tectonic family member 1 XM_011538733.3 94.5% 91.8% (many diffs)
5 human 79600 TCTN1 tectonic family member 1 XM_011538734.3 93.6% 93% (many diffs)
6 human 79600 TCTN1 tectonic family member 1 XR_944717.3 91.6% 1_54del;1545_1558del;1830_1921del
7 human 79600 TCTN1 tectonic family member 1 NM_001319680.2 91.6% 91.6% 1190_1191ins147
8 human 79600 TCTN1 tectonic family member 1 XM_011538735.2 90.8% 90.8% 1190_1191ins147;1346_1360del
9 human 79600 TCTN1 tectonic family member 1 NM_001173975.3 88.7% 87% (many diffs)
10 human 79600 TCTN1 tectonic family member 1 XM_006719594.3 88% 86.2% (many diffs)
11 human 79600 TCTN1 tectonic family member 1 XM_011538737.3 86.4% 79.7% 1102_1103ins227;1264_1277del
12 human 79600 TCTN1 tectonic family member 1 NM_001173976.2 80.5% 77.5% (many diffs)
13 human 79600 TCTN1 tectonic family member 1 XM_017019964.1 80.4% 78.7% (many diffs)
14 human 79600 TCTN1 tectonic family member 1 XR_243021.4 80.4% 1_54del;1156_1157ins227;1589_1680del
15 human 79600 TCTN1 tectonic family member 1 XR_429116.3 79.8% (many diffs)
16 human 79600 TCTN1 tectonic family member 1 XM_011538738.3 79.3% 73.6% 976_977ins353;1138_1151del
17 human 79600 TCTN1 tectonic family member 1 XR_243022.4 73.8% 1_54del;1030_1031ins353;1463_1554del
18 human 79600 TCTN1 tectonic family member 1 XM_005253934.4 71.4% 71.2% (many diffs)
19 human 79600 TCTN1 tectonic family member 1 XM_005253935.4 70.6% 70.6% 976_977ins516
20 human 79600 TCTN1 tectonic family member 1 NM_001319681.2 69.6% 69.6% 0_1ins534
21 human 79600 TCTN1 tectonic family member 1 XM_006719595.3 69% 69% 0_1ins534;959_973del
22 human 79600 TCTN1 tectonic family member 1 XM_006719596.3 69% 69% 0_1ins534;959_973del
23 human 79600 TCTN1 tectonic family member 1 XM_006719597.4 69% 69% 0_1ins534;959_973del
24 human 79600 TCTN1 tectonic family member 1 XM_006719598.3 69% 69% 0_1ins534;959_973del
25 human 79600 TCTN1 tectonic family member 1 XM_006719599.3 69% 69% 0_1ins534;959_973del
26 human 79600 TCTN1 tectonic family member 1 XM_006719600.3 69% 69% 0_1ins534;959_973del
27 human 79600 TCTN1 tectonic family member 1 XM_017019966.2 69% 69% 0_1ins534;959_973del
28 human 79600 TCTN1 tectonic family member 1 XM_017019968.2 69% 69% 0_1ins534;959_973del
29 human 79600 TCTN1 tectonic family member 1 XM_017019969.2 64.6% 62.3% (many diffs)
30 human 79600 TCTN1 tectonic family member 1 NR_135088.2 59.8% (many diffs)
31 human 79600 TCTN1 tectonic family member 1 NM_001319682.2 29.5% 25.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1830
ORF length:
1761
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAGGCCGCGA GGTCTCCCGC CGCTCCTGGT GGTGCTCCTG GGCTGCTGGG
121CCTCCGTGAG CGCCCAGACC GATGCCACCC CGGCGGTGAC GACAGAGGGC CTCAACTCCA
181CCGAGGCAGC CCTGGCCACC TTCGGAACTT TCCCGTCGAC CAGGCCCCCC GGGACTCCCA
241GGGCTCCAGG GCCCTCCTCC GGCCCCAGGC CTACCCCAGT CACGGACGTT GCTGTTCTCT
301GTGTCTGTGA CTTATCCCCA GCACAGTGTG ACATCAACTG CTGCTGTGAT CCCGACTGCA
361GCTCCGTGGA TTTCAGTGTC TTTTCTGCCT GCTCAGTTCC AGTTGTCACG GGCGACAGCC
421AGTTTTGTAG TCAAAAAGCA GTCATCTATT CATTGAATTT TACAGCAAAC CCACCTCAAA
481GAGTATTTGA ACTTGTTGAC CAGATTAATC CATCTATTTT CTGCATTCAT ATTACAAACT
541ATAAACCTGC ATTATCCTTT ATTAATCCAG AAGTACCTGA TGAAAACAAT TTTGATACAT
601TGATGAAAAC ATCTGATGGT TTTACATTGA ATGCTGAATC ATATGTTTCC TTCACAACCA
661AACTGGATAT TCCTACTGCT GCTAAATATG AGTATGGGGT TCCTCTGCAG ACTTCAGATT
721CGTTTCTGAG ATTTCCTTCG TCCCTGACAT CATCTCTGTG CACTGATAAT AACCCTGCAG
781CGTTTCTGGT GAACCAGGCT GTTAAGTGCA CCAGAAAAAT AAATTTAGAA CAGTGTGAAG
841AAATTGAAGC CCTCAGCATG GCTTTTTACA GCAGCCCGGA AATTCTGAGG GTACCTGATT
901CAAGAAAAAA GGTCCCTATC ACTGTTCAGT CCATCGTCAT TCAGTCTCTA AATAAAACGC
961TCACCCGACG GGAGGACACT GATGTGCTGC AGCCGACTCT CGTCAACGCT GGACACTTTA
1021GCCTTTGCGT GAATGTTGTT CTTGAGGTAA AGTACAGCCT CACATACACA GATGCAGGTG
1081AAGTCACCAA AGCTGATCTC TCATTCGTTC TGGGGACAGT TAGCAGCGTA GTGGTCCCAC
1141TGCAGCAAAA GTTTGAAATT CATTTTCTTC AGGAAAATAC CCAGCCAGTC CCTCTCAGTG
1201GAAACCCTGG TTATGTCGTG GGGCTCCCAT TAGCTGCTGG ATTCCAGCCT CATAAGGGGT
1261CTGGGATTAT TCAGACCACA AATAGATATG GACAGCTTAC TATTCTTCAT AGCACAACTG
1321AGCAAGACTG CTTAGCACTG GAGGGGGTCC GGACCCCAGT ATTATTTGGT TACACTATGC
1381AATCTGGCTG TAAACTAAGA CTGACTGGAG CTCTCCCGTG TCAGCTCGTA GCACAGAAGG
1441TGAAGAGCCT GCTGTGGGGC CAGGGCTTCC CAGATTACGT GGCCCCTTTT GGAAATTCCC
1501AGGCCCAGGA CATGCTGGAC TGGGTGCCCA TCCACTTCAT CACCCAGTCA TTCAACAGGA
1561AGGATTCCTG CCAGCTCCCA GGGGCTTTGG TTATAGAAGT GAAGTGGACT AAATACGGAT
1621CCCTGCTGAA TCCACAGGCC AAAATAGTCA ATGTAACTGC AAATCTAATT TCATCCTCCT
1681TTCCTGAGGC CAACTCAGGA AATGAAAGGA CGATTCTTAT TTCCACTGCG GTTACTTTTG
1741TGGATGTGTC TGCACCTGCA GAGGCAGGCT TCAGAGCTCC ACCAGCCATC AATGCCAGGC
1801TGCCCTTTAA CTTCTTCTTC CCGTTTGTTT TGCCAACTTT CTTGTACAAA GTTGGcatta
1861taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)

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