Construct: ORF ccsbBroadEn_04109
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005555.1_s300c1, BRDN0000397202
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF322 (79692)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79692 | ZNF322 | zinc finger protein 322 | NM_001242797.1 | 100% | 100% | |
| 2 | human | 79692 | ZNF322 | zinc finger protein 322 | NM_001242798.1 | 100% | 100% | |
| 3 | human | 79692 | ZNF322 | zinc finger protein 322 | NM_001242799.1 | 100% | 100% | |
| 4 | human | 79692 | ZNF322 | zinc finger protein 322 | NM_024639.5 | 100% | 100% | |
| 5 | mouse | 218100 | Zfp322a | zinc finger protein 322A | NM_001111107.2 | 86.1% | 83.1% | (many diffs) |
| 6 | mouse | 218100 | Zfp322a | zinc finger protein 322A | NM_001286155.1 | 86.1% | 83.1% | (many diffs) |
| 7 | mouse | 218100 | Zfp322a | zinc finger protein 322A | NM_001286156.1 | 86.1% | 83.1% | (many diffs) |
| 8 | mouse | 218100 | Zfp322a | zinc finger protein 322A | NM_172586.4 | 86.1% | 83.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1272
- ORF length:
- 1206
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTA CACTTCAGAA GAGAAATGTA ATCAGAGAAC TCAAAAAAGG AAAATATATA 121 ATGTATGCCC TCGGAAGGGT AAAAAGATTT TTATTCATAT GCATGAGATT ATTCAGATAG 181 ATGGTCATAT ATACCAGTGC CTTGAATGCA AGCAAAACTT CTGTGAAAAC TTAGCTCTTA 241 TTATGTGTGA GAGAACCCAT ACTGGGGAGA AACCTTATAA ATGTGATATG TGTGAGAAAA 301 CCTTTGTCCA AAGCTCAGAT CTTACTTCAC ACCAGAGGAT CCACAATTAC GAGAAACCTT 361 ATAAATGTAG CAAATGTGAG AAGAGCTTTT GGCATCACTT AGCGCTTTCA GGACATCAGA 421 GAACACATGC AGGTAAAAAA TTCTATACAT GTGACATTTG TGGCAAGAAT TTTGGTCAGA 481 GTTCTGATCT GCTTGTCCAC CAGCGAAGCC ATACTGGCGA GAAACCATAT CTATGTAGTG 541 AGTGTGACAA ATGCTTCAGT AGAAGTACAA ACCTCATAAG GCATCGAAGA ACTCACACAG 601 GTGAGAAACC ATTTAAGTGT CTCGAGTGTG AAAAAGCTTT TAGTGGGAAA TCAGATCTTA 661 TTAGCCACCA GAGAACTCAC ACTGGGGAAA GGCCCTACAA ATGTAATAAG TGTGAGAAAA 721 GTTACCGACA CCGTTCAGCC TTCATTGTAC ATAAAAGAGT TCATACTGGG GAGAAGCCCT 781 ATAAGTGTGG TGCCTGTGAA AAATGCTTTG GCCAGAAATC AGACCTTATC GTGCACCAGA 841 GAGTCCACAC AGGTGAGAAG CCGTATAAAT GCCTGGAATG TATGAGAAGT TTTACTCGGA 901 GTGCCAACCT AATTAGGCAC CAGGCAACTC ACACTCACAC TTTTAAATGC CTTGAATATG 961 AAAAAAGCTT TAACTGTAGC TCAGATCTTA TTGTACATCA GAGAATTCAC ATGGAAGAGA 1021 AACCACATCA GTGGTCTGCG TGTGAGAGTG GCTTCCTCCT AGGAATGGAC TTTGTTGCCC 1081 AACAGAAAAT GAGAACTCAA ACAGAGGAGC TACACTATAA ATACACTGTA TGTGATAAAA 1141 GCTTCCACCA GAGTTCAGCC CTTCTTCAAC ATCAGACAGT ACACATTGGT GAAAAACCGT 1201 TTGTCTGTAA TGTGAGTGAA AAAGGTCTTG AGCTTAGCCC TCCCCATGCG TCAGAAGCCT 1261 CACAGATGTC TTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1321 caatttgttg caacgaac