Construct: ORF ccsbBroadEn_04125
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015476.1_s300c1, BRDN0000398211
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRC31 (79782)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79782 | LRRC31 | leucine rich repeat contain... | NM_024727.4 | 100% | 100% | |
| 2 | human | 79782 | LRRC31 | leucine rich repeat contain... | NM_001277128.2 | 89.8% | 89.8% | 316_317ins168 |
| 3 | human | 79782 | LRRC31 | leucine rich repeat contain... | XM_011513158.2 | 89.8% | 89.8% | 1158_1159ins168 |
| 4 | human | 79782 | LRRC31 | leucine rich repeat contain... | XM_011513159.2 | 89.8% | 89.6% | 823_824ins168 |
| 5 | human | 79782 | LRRC31 | leucine rich repeat contain... | XM_017007204.1 | 88.2% | 88.2% | 0_1ins195 |
| 6 | human | 79782 | LRRC31 | leucine rich repeat contain... | NM_001277127.2 | 80.2% | 80% | 1327_1328insCATCGGTCATAC;1329_1330ins315 |
| 7 | human | 79782 | LRRC31 | leucine rich repeat contain... | XM_011513160.3 | 61.9% | 60.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1725
- ORF length:
- 1656
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAGTCAAACA AGGAAGAAAA CTTCCTCAGA AGGAGAAACT AAGCCCCAGA 121 CTTCAACTGT CAACAAATTT CTCAGGGGCT CCAATGCTGA AAGCAGAAAA GAGGACAATG 181 ACCTTAAAAC AAGTGATTCC CAACCCAGCG ACTGGATACA GAAGACAGCC ACCTCAGAGA 241 CTGCTAAGCC TCTCAGTTCA GAAATGGAAT GGAGATCCAG TATGGAGAAA AATGAGCATT 301 TCCTGCAGAA GCTGGGCAAA AAGGCTGTCA ACAAGTGTCT AGATTTGAAT AACTGTGGAT 361 TAACAACAGC GGACATGAAA GAAATGGTTG CCTTGCTGCC TTTTCTCCCA GACTTGGAAG 421 AACTGGATAT CTCCTGGAAT GGTTTTGTAG GTGGAACCCT CCTTTCCATC ACTCAGCAAA 481 TGCATCTGGT CAGCAAGTTA AAAATCTTGA GGCTGGGTAG CTGCAGACTC ACCACTGACG 541 ATGTTCAAGC ACTGGGAGAA GCATTTGAGA TGATTCCTGA ACTTGAAGAG CTAAATTTGT 601 CTTGGAACAG TAAAGTGGGA GGAAATTTGC CTCTGATCCT TCAGAAGTTC CAAAAAGGGA 661 GCAAGATACA AATGATTGAG CTTGTGGATT GCTCCCTCAC GTCAGAAGAT GGGACATTTC 721 TGGGTCAACT GCTACCTATG CTGCAAAGTC TCGAAGTACT TGATCTTTCC ATTAACAGAG 781 ACATTGTTGG CAGTCTGAAC AGTATTGCTC AGGGATTAAA AAGCACCTCA AATCTGAAAG 841 TACTGAAGTT ACATTCATGT GGATTATCAC AAAAGAGTGT CAAAATATTG GATGCTGCTT 901 TTAGGTATTT GGGTGAGCTG AGGAAATTAG ATCTTTCCTG CAATAAGGAT CTAGGTGGAG 961 GTTTTGAAGA CTCGCCGGCT CAGTTGGTCA TGCTAAAGCA TCTACAAGTC CTAGATCTTC 1021 ACCAGTGCTC ACTAACAGCA GATGACGTGA TGTCACTGAC CCAGGTCATT CCTTTACTTT 1081 CAAATCTTCA AGAATTGGAT TTATCAGCCA ACAAAAAGAT GGGCAGTTCT TCTGAAAACT 1141 TACTCAGCAG GCTCCGATTT TTACCAGCAT TGAAGTCATT AGTTATCAAC AACTGTGCTT 1201 TGGAGAGTGA GACTTTTACA GCTCTTGCTG AAGCCTCTGT TCACCTCTCT GCTCTGGAAG 1261 TATTCAACCT TTCTTGGAAC AAGTGTGTTG GTGGCAACTT GAAGCTGCTT CTGGAAACAC 1321 TAAAGCTTTC CATGTCTCTT CAAGTGCTGA GGCTGAGCAG CTGTTCCCTG GTGACAGAGG 1381 ATGTGGCTCT CCTGGCATCG GTCATACAGA CGGGTCATCT GGCCAAACTG CAAAAGCTGG 1441 ACCTGAGCTA CAATGACAGC ATCTGTGATG CGGGGTGGAC CATGTTCTGC CAAAACGTGC 1501 GGTTCCTCAA AGAGCTAATC GAGCTGGATA TTAGCCTTCG ACCATCAAAT TTTCGAGATT 1561 GTGGACAATG GTTTAGACAC TTGTTATATG CTGTGACCAA GCTTCCTCAG ATCACTGAGA 1621 TAGGAATGAA AAGATGGATT CTCCCAGCTT CACAGGAGGA AGAACTAGAA TGCTTTGACC 1681 AAGATAAAAA AAGAAGCATT CACTTTGACC ATGGTGGGTT TCAGTTGCCA ACTTTCTTGT 1741 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c