Construct: ORF ccsbBroadEn_04148

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017003.1_s300c1, BRDN0000397827
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MRM1 (79922)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79922 MRM1 mitochondrial rRNA methyltr... NM_024864.5 100% 100%
2 human 79922 MRM1 mitochondrial rRNA methyltr... XM_017025112.2 88.4% 85% (many diffs)
3 human 79922 MRM1 mitochondrial rRNA methyltr... XM_011525275.3 87.9% 83.3% (many diffs)
4 human 79922 MRM1 mitochondrial rRNA methyltr... XM_011525276.3 87.9% 83.3% (many diffs)
5 human 79922 MRM1 mitochondrial rRNA methyltr... XM_005257694.5 60.5% 60.3% (many diffs)
6 human 79922 MRM1 mitochondrial rRNA methyltr... XR_934554.2 34.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1125
ORF length:
1059
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC ATTGCTCTCG ACCGTCCGGG GCGCGACCTG GGGTCGCCTC GTCACCCGTC
121ATTTCTCCCA TGCAGCGCGG CATGGGGAGC GGCCTGGTGG GGAGGAGCTA AGCCGCTTGC
181TGCTGGATGA CCTGGTGCCG ACCTCTCGGC TGGAGCTTCT GTTTGGCATG ACCCCGTGTC
241TCCTGGCTCT GCAGGCCGCC CGCCGCTCTG TGGCCCGGCT CCTGCTCCAG GCGGGTAAAG
301CTGGGCTGCA GGGGAAGCGG GCCGAGCTGC TCCGGATGGC CGAGGCGCGG GACATTCCAG
361TTCTGCGGCC CAGACGGCAG AAACTGGACA CAATGTGCCG CTACCAGGTC CACCAGGGTG
421TCTGCATGGA GGTGAGCCCG CTGCGGCCCC GGCCTTGGAG AGAGGCCGGG GAGGCGAGCC
481CAGGCGACGA CCCCCAGCAG TTGTGGCTCG TCCTCGATGG GATCCAGGAT CCCCGGAATT
541TTGGGGCTGT GCTGCGTTCC GCACACTTCC TCGGAGTGGA TAAGGTCATC ACCAGCCGGA
601GAAACAGCTG CCCGCTCACT CCAGTAGTCA GCAAGTCCAG CGCGGGGGCT ATGGAGGTGA
661TGGACGTGTT CTCCACTGAT GACCTCACCG GATTTTTACA GACCAAAGCC CAGCAGGGCT
721GGCTCGTGGC CGGCACGGTG GGCTGCCCAA GCACAGAGGA TCCCCAGTCC TCCGAGATCC
781CCATCATGAG TTGCTTGGAG TTCCTCTGGG AACGGCCTAC TCTCCTTGTG CTGGGGAATG
841AGGGCTCAGG TCTATCCCAG GAGGTGCAGG CCTCCTGCCA GCTTCTCCTC ACCATCCTGC
901CCCGGCGCCA GCTGCCTCCT GGACTTGAGT CCTTGAACGT CTCTGTGGCT GCAGGAATTC
961TTCTTCACTC CATTTGCAGC CAGAGGAAGG GTTTCCCCAC AGAGGGGGAG AGAAGGCAGC
1021TTCTCCAAGA CCCCCAAGAA CCCTCAGCCA GGTCTGAAGG GCTCAGCATG GCTCAGCACC
1081CAGGGCTGTC TTCAGGCCCA GAGAAAGAGA GGCAAAATGA GGGCTGCCCA ACTTTCTTGT
1141ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)