Construct: ORF ccsbBroadEn_04173
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005123.1_s300c1, BRDN0000456837
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C7orf69 (80099)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80099 | C7orf69 | chromosome 7 open reading f... | NR_161268.1 | 55.1% | 1_45del;412_664del | |
| 2 | human | 80099 | C7orf69 | chromosome 7 open reading f... | NR_161269.1 | 45.2% | 1_45del;154_297del;556_808del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 435
- ORF length:
- 366
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGTTTCCAC TTTTGCATCT GGATCATTTT TCTCTTGCCA CCACCATGTA 121 AGAAGTGCCT TTCACCTCCC ACCATGAACC TGAGGCCTCC CAAGTCATGT GGAAATGTCT 181 TTTATTGGGT GCTGGTTCTT AACTCTGGAC TTCTCTACAA GTTTTGTCAA ACTATCAAAT 241 GCAGAGCAAA TTGGAGGCCT GCCAGAGCAC CCAGAGGGTG GAATGAAGCA ACAGAGAGGC 301 ATCAGGAAAG GAGAACACAG ATGGAGACAG AGATGGGAGG CATAAGCACC ACCTACTGGC 361 ACAGGCTGTG CACTTGCACG GATAGGAGAG CTGAAAAGTT GGTCATGGAT GGAAATAACT 421 GCTGGTTTCA CAAATTGCCA ACTTTCTTGT ACAAAGTTGG cattataaga aagcattgct 481 tatcaatttg ttgcaacgaa c