Construct: ORF ccsbBroadEn_04180
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010190.1_s300c1, BRDN0000455942
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MOGAT2 (80168)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80168 | MOGAT2 | monoacylglycerol O-acyltran... | NM_025098.4 | 100% | 100% | |
| 2 | human | 80168 | MOGAT2 | monoacylglycerol O-acyltran... | XM_011545267.1 | 87% | 82.3% | (many diffs) |
| 3 | human | 80168 | MOGAT2 | monoacylglycerol O-acyltran... | XM_024448696.1 | 63.9% | 59.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1071
- ORF length:
- 1002
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGTAGAGTTC GCGCCCTTGT TTATGCCGTG GGAGCGCAGG CTGCAGACAC 121 TTGCTGTCCT ACAGTTTGTC TTCTCCTTCT TGGCACTGGC CGAGATCTGC ACTGTGGGCT 181 TCATAGCCCT CCTGTTTACA AGATTCTGGC TCCTCACTGT CCTGTATGCG GCCTGGTGGT 241 ATCTGGACCG AGACAAGCCA CGGCAGGGGG GCCGGCACAT CCAGGCCATC AGGTGCTGGA 301 CTATATGGAA GTACATGAAG GACTATTTCC CCATCTCGCT GGTCAAGACT GCTGAGCTGG 361 ACCCCTCTCG GAACTACATT GCGGGCTTCC ACCCCCATGG AGTCCTGGCA GTCGGAGCCT 421 TTGCCAACCT GTGCACTGAG AGCACAGGCT TCTCTTCGAT CTTCCCCGGT ATCCGCCCCC 481 ATCTGATGAT GCTGACCTTG TGGTTCCGGG CCCCCTTCTT CAGAGATTAC ATCATGTCTG 541 CAGGGTTGGT CACATCAGAA AAGGAGAGTG CTGCTCACAT TCTGAACAGG AAGGGTGGCG 601 GAAACTTGCT GGGCATCATT GTAGGGGGTG CCCAGGAGGC CCTGGATGCC AGGCCTGGAT 661 CCTTCACGCT GTTACTGCGG AACCGAAAGG GCTTCGTCAG GCTCGCCCTG ACACACGGGG 721 CACCCCTGGT GCCAATCTTC TCCTTCGGGG AGAATGACCT ATTTGACCAG ATTCCCAACT 781 CTTCTGGCTC CTGGTTACGC TATATCCAGA ATCGGTTGCA GAAGATCATG GGCATCTCCC 841 TCCCACTCTT TCATGGCCGT GGTGTCTTCC AGTACAGCTT TGGTTTAATA CCCTACCGCC 901 GGCCCATCAC CACTGTGGTG GGGAAGCCCA TCGAGGTACA GAAGACGCTG CATCCCTCGG 961 AGGAGGAGGT GAACCAGCTG CACCAGCGTT ATATCAAAGA GCTGTGCAAC CTCTTCGAGG 1021 CCCACAAACT TAAGTTCAAC ATCCCTGCTG ACCAGCACTT GGAGTTCTGC TTGCCAACTT 1081 TCTTGTACAA AGTTGGcatt ataagaaagc attgcttatc aatttgttgc aacgaac