Construct: ORF ccsbBroadEn_04197

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012828.1_s300c1, BRDN0000396852
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EFHC2 (80258)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80258 EFHC2 EF-hand domain containing 2 NM_025184.4 100% 100%
2 human 80258 EFHC2 EF-hand domain containing 2 XM_024452453.1 95.7% 95.7% 0_1ins96
3 human 80258 EFHC2 EF-hand domain containing 2 XM_006724562.2 73.8% 73.8% 0_1ins588
4 human 80258 EFHC2 EF-hand domain containing 2 XR_949019.1 46.1% 1_77del;2023_2024delAA;2327_4870del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2313
ORF length:
2247
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CCTGCCTCTG CTGCCGGGCA ACAGCTTCAA CCGCAACGTG GGAAAGGAGA
121AGTTTCACAA ATCCCAACAT TGGGGCTTTT GCAACAATGT TATGATGTTG GTGAGTGATG
181AAAAGCCTGG AATAGGTGGA GAACCACTTC TGGGGCAAAA GATAAAGCCT AAATGTAGCA
241TATATCCTAA AGGAGATGGA AGTGATGTAC CATCATGGGT AGCCTTTGAT AAACAGGTAT
301TATCTTTTGA TGCCTATTTG GAAGAGGAAG TACTTGATAA AAGCCAAACC AACTACAGAA
361TAAGATACTA TAAAATCTAC TTCTACCCTG AAGATGACAC AATTCAAGTA AATGAACCAG
421AGGTGAAAAA TAGTGGATTA CTTCAAGGGA CTTCTATCCG GCGTCATCGG ATTACTCTTC
481CGCCTCCTGA TGAGGATCAG TTTTATACTG TGTATCATTT TAATGTCGGC ACAGAGGTTG
541TCTTCTATGG CCGGACATTC AAGATTTATG ACTGTGATGC ATTCACAAGA AACTTTTTGA
601GGAAAATAGG GGTCAAAGTG AATCCCCCAG TGCAATGTCC AGAAGATCCT TACATGAAGA
661TTCGGAGAGA GGTTGTAGAA CACGTAGAGC CCTTACGTCC CTACGAATCC CTCGACACCC
721TGAAACAGTT CCTCCAGTAT CATGGCAAGA TTTTGTGTTT CTTCTGCCTG TGGGATGACT
781CAGTCTCAAT GTTTGGAGAC CGTAGAGAAC TCATCCTGCA TTACTTCTTG TGTGATGATA
841CTATTGAAAT CAAAGAATTG CTTCCACACA GCTCAGGCCG AGATGCTCTA AAAATGTTCC
901TCCGGAGGAG TAAGCTACCC AAGAATTGCC CACCTAGAGT CTATCAACCA GGCCAGATAA
961CAGATCGAGC AGTTCTCAAT TCATATGGTG ACTTTATAAA GAACCAAGCG GATGGCTACC
1021TGTTCGATAG ATATAAGCTA GGAAAAGTAG ACCAAGAGTT TTACAAAGAT AGTGACCTGT
1081CCCTAGGAGT CACCATCAAT GTGTGGGGAA GAAAAGTGCT CCTTTATGAC TGTGATGAAT
1141TTACGAAGTC TTATTATAAG TCTAAATATG GAATTGAGAA CTTTACCTCA GTTTCATGCA
1201AGCCTCCTTC TCCTCCTCCA AAAATAGAAA GGAAATTTCC ACCTTACAAC GGTTTTGGTT
1261CTGAAGAGGA TTCTCTCCGT AACTGCATAG ACCTCAAGCC CACACCTCAT CGGAGGAACT
1321TCAAGAAGTT TATGGAAAAA GACAGCTATG GCTCCAAAAG CAATATACTC CGTTTTTTTG
1381CAAAACTAGT CACAGACAAA TGTGTTGACT TGGACAGGAT GTTTGTTATT TCATATTATC
1441TCGGTGATGA CACCATTTCA GTGTTTGAAC CTATAGAGAG GAATTCAGGA ATTGCTGGTG
1501GGATGTTCTT GAAAAGAAGT CGCGTTAAGA AGCCTGGACA AGAAGTCTTT AAAAGTGAAC
1561TATCTGAATA TATCAAGGCC GAGGAGCTGT ACATTGGAGT CACGGTGAAT GTGAATGGTT
1621ACCTATTTCG TTTGCTCAAT GCTGATGAGT ATACCTTAAA CTACATGGAG CAGAATACAG
1681ATAAGTATCC TTTCAGTAAC CTCAAACTTG CCCTACAAAA GCTGAAGCAA GAAGAAGGAA
1741AATCCAGAGA GCTCAAGCAG GTATTTAAAG CTGCTGACTC TAAGCACACA AATATGGTGG
1801ATTATAATAC ATTCAGAGAC ATATTGATGT CTTTGACTGT TGGAAACCTT GCAGAGCAAG
1861AATTTGTAAC CATTGCACGT CACTACCGTG TGCCTGAGGG CACATGTTCA GATATGGATT
1921TCTTAATCGC ACTGGCCCAC GAAAAGTTCA AGAAAAATAT GTTTGAGAAT TTCGACACTT
1981TCATTTATTC CTGTGTGTAT GAAGATCGAG AAAAAAAAAA TGTATTACCC ACCAAAGACA
2041TTAAAAGGCT GTGCAAATCC TCCAGATTAC CTTTGAGTGA TGATCTTCTA GAATCCTTAT
2101TGTCAAGGTT TGAAGACAGT GAAAAACAAA TAGATTATAA GTCATTTTTC TCTGCCCTGA
2161ACTGGAGAAA GAATCCAGTG CCTGAATTGC AACCAGCATC ATACCTTAAA GAGAGATGTG
2221AAGATGTTTG GCTTGGTATG CCATCACCTA TTCCTGCGAA ATACATTGAC TACTGGACCT
2281TTTTGAAGGA CGCGTTTGGC TTAGAGGAGG AATACCCAAC TTTCTTGTAC AAAGTtggca
2341ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.