Construct: ORF ccsbBroadEn_04224

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011704.1_s300c1, BRDN0000390881
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
INTS5 (80789)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80789 INTS5 integrator complex subunit 5 NM_030628.2 100% 100%
2 mouse 109077 Ints5 integrator complex subunit 5 NM_176843.3 88.6% 95.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3123
ORF length:
3057
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC CGCGCTGTGC GACCCTCCCG GGGCCCCAGG GCCACCTGGG CCTGCCCCGG
121CCACCCACGG TCCCGCGCCT CTCAGTGCTC AGGAGCTGTC CCAGGAAATC AAGGCTTTTC
181TGACTGGCGT AGACCCCATT CTGGGCCACC AACTCTCAGC CCGGGAACAT GCTCGCTGTG
241GTCTTCTCCT GCTCCGTTCT TTGCCACCTG CTCGGGCTGC TGTGCTTGAC CACTTGAGAG
301GTGTCTTTGA TGAGAGTGTC CGGGCCCACC TGGCTGCCCT GGATGAAACC CCTGTGGCTG
361GTCCACCTCA CCTCCGTCCA CCTCCACCCT CTCATGTCCC TGCTGGTGGA CCTGGTCTAG
421AGGATGTGGT TCAGGAAGTG CAGCAGGTGC TGTCTGAGTT TATCCGGGCC AACCCAAAGG
481CCTGGGCACC TGTGATTAGT GCATGGTCCA TTGACCTCAT GGGGCAACTG AGCAGCACGT
541ACTCAGGCCA GCACCAGCGT GTTCCCCACG CTACTGGCGC TCTTAATGAA CTGCTACAGC
601TGTGGATGGG TTGTAGGGCC ACGCGTACAT TAATGGACAT CTATGTGCAG TGCCTCTCGG
661CTCTCATTGG TAGCTGCCCA GATGCGTGTG TGGATGCCTT GCTGGATACC TCTGTTCAGC
721ATTCTCCACA CTTTGACTGG GTTGTGGCAC ATATTGGCTC CTCTTTTCCT GGCACCATCA
781TTTCCCGGGT TCTCTCCTGT GGCCTTAAGG ACTTTTGTGT CCATGGTGGG GCTGGAGGTG
841GAGCTGGCAG TAGTGGTGGA AGCTCTTCTC AGACCCCCTC TACAGACCCC TTCCCTGGAT
901CTCCTGCCAT TCCTGCGGAG AAACGGGTGC CCAAGATTGC CTCAGTTGTA GGCATCCTAG
961GTCACCTGGC CTCCCGCCAC GGAGATAGCA TCCGACGGGA GCTCCTGCGA ATGTTCCATG
1021ATAGCCTGGC AGGGGGATCT GGAGGCCGCA GTGGGGACCC CTCCCTTCAG GCCACGGTTC
1081CGTTCCTACT GCAGCTGGCA GTCATGTCAC CAGCTTTGCT GGGCACTGTC TCTGGAGAGC
1141TTGTGGATTG CCTCAAGCCC CCAGCTGTGC TGAGCCAGCT GCAGCAACAC CTTCAAGGAT
1201TCCCCCGAGA GGAGCTGGAC AACATGTTGA ACCTGGCTGT GCACCTGGTG AGCCAGGCCT
1261CTGGGGCAGG TGCCTACCGC TTGCTGCAGT TCCTGGTGGA CACAGCTATG CCTGCTTCGG
1321TCATTACCAC CCAGGGCCTG GCTGTGCCAG ACACCGTGCG TGAGGCTTGT GACCGGCTAA
1381TCCAGCTGCT GCTGCTGCAC CTGCAAAAAC TGGTTCATCA CCGGGGAGGG TCTCCTGGGG
1441AAGGGGTGCT AGGCCCGCCC CCACCTCCCC GCTTGGTGCC CTTTTTAGAT GCGCTCAAAA
1501ACCATGTTGG AGAGCTGTGT GGAGAGACGT TACGATTGGA ACGGAAGCGC TTCCTCTGGC
1561AGCACCAGCT CTTGGGCCTG CTGTCTGTCT ATACCCGGCC TAGCTGTGGA CCTGAGGCCT
1621TGGGCCATCT GCTGAGCCGA GCCCGAAGCC CTGAAGAGTT GAGTTTGGCC ACCCAGTTAT
1681ATGCAGGGCT AGTGGTCAGC CTCTCTGGCC TCCTGCCCCT GGCTTTCCGA AGCTGTCTGG
1741CTCGGGTGCA TGCAGGGACA TTACAGCCTC CCTTCACGGC CCGGTTCCTG CGCAACTTGG
1801CACTGCTAGT AGGGTGGGAA CAGCAGGGTG GCGAGGGCCC TGCAGCCCTA GGGGCGCACT
1861TTGGGGAATC TGCCTCAGCC CATCTGTCTG ACCTGGCTCC TCTCCTGCTA CATCCTGAGG
1921AGGAAGTAGC TGAAGCTGCT GCCTCTCTCC TGGCCATTTG TCCCTTTCCT TCTGAAGCCT
1981TATCCCCCTC CCAGCTCCTG GGACTGGTAA GGGCTGGGGT GCACCGCTTC TTTGCCTCTC
2041TGAGGCTGCA TGGACCCCCA GGTGTGGCCT CAGCCTGTCA GCTTCTCACC CGCCTGTCTC
2101AGACATCCCC AGCTGGGCTC AAGGCTGTCC TGCAGCTGCT GGTTGAAGGA GCCTTACATC
2161GAGGCAACAC AGAACTGTTT GGTGGGCAAG TAGATGGGGA CAATGAGACT CTCTCAGTTG
2221TTTCAGCTTC TTTGGCTTCT GCCTCCCTGT TGGACACTAA CCGGAGGCAC ACTGCAGCTG
2281TGCCAGGTCC TGGAGGGATT TGGTCAGTTT TCCATGCTGG AGTCATCGGC CGTGGCTTAA
2341AGCCACCCAA GTTTGTCCAG TCACGAAATC AGCAGGAAGT GATCTATAAC ACCCAGAGCC
2401TCCTCAGCCT CCTGGTTCAC TGCTGCAGTG CCCCAGGGGG CACTGAATGT GGGGAATGCT
2461GGGGGGCACC CATCTTGAGT CCAGAGGCAG CCAAAGCAGT GGCAGTGACC TTGGTGGAGA
2521GTGTGTGTCC CGATGCAGCT GGTGCAGAGC TGGCCTGGCC CCCCGAGGAA CACGCCCGGG
2581CCACCGTGGA GCGGGATCTC CGCATTGGCC GGCGCTTCCG CGAACAGCCC CTGCTCTTTG
2641AGCTGTTAAA GCTGGTAGCA GCTGCACCCC CAGCCCTGTG CTACTGTTCC GTGCTGCTTC
2701GGGGGCTGCT GGCCGCCCTC TTGGGCCATT GGGAAGCCTC TCGCCACCCT GACACGACCC
2761ACTCCCCCTG GCACCTGGAG GCATCCTGCA CCTTAGTGGC TGTCATGGCT GAGGGAAGCC
2821TCCTGCCTCC GGCCCTGGGT AATATGCATG AAGTATTTAG CCAACTGGCA CCTTTCGAGG
2881TGCGTCTGCT GCTGCTCAGT GTCTGGGGTT TTCTCCGGGA GCATGGGCCC TTGCCTCAGA
2941AGTTCATCTT CCAATCAGAG CGGGGTCGCT TCATTCGGGA CTTCTCCAGG GAGGGTGGAG
3001GTGAGGGTGG ACCCCATCTG GCTGTGCTGC ACAGTGTCCT CCACCGCAAC ATCGACCGCC
3061TAGGTCTTTT CTCTGGCCGT TTCCAGGCAC CTTCACCGTC CACTCTCCTT CGACAGGGGA
3121CGTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
3181gcaacgaac

Download FASTA (ORF) (Full)

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