Construct: ORF ccsbBroadEn_04240

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016863.1_s300c1, BRDN0000395690
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CLPB (81570)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 81570 CLPB ClpB homolog, mitochondrial... NM_030813.6 100% 100%
2 human 81570 CLPB ClpB homolog, mitochondrial... XM_005274320.1 95.8% 95.8% 452_453ins87
3 human 81570 CLPB ClpB homolog, mitochondrial... NM_001258392.3 95.7% 95.7% 645_646ins90
4 human 81570 CLPB ClpB homolog, mitochondrial... NM_001258393.3 91.6% 91.6% 452_453ins87;558_559ins90
5 human 81570 CLPB ClpB homolog, mitochondrial... NM_001258394.2 84.3% 80.4% 0_1ins242;211_317del
6 human 81570 CLPB ClpB homolog, mitochondrial... XM_011545289.2 51.8% 51.2% (many diffs)
7 mouse 20480 Clpb ClpB caseinolytic peptidase B XM_006507488.3 86% 87.8% (many diffs)
8 mouse 20480 Clpb ClpB caseinolytic peptidase B NM_009191.3 82.3% 84.5% (many diffs)
9 mouse 20480 Clpb ClpB caseinolytic peptidase B XM_011241702.2 71.4% 75.5% (many diffs)
10 mouse 20480 Clpb ClpB caseinolytic peptidase B XM_006507489.3 60.9% 64% (many diffs)
11 mouse 20480 Clpb ClpB caseinolytic peptidase B XM_011241703.2 60.7% 65.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2187
ORF length:
2121
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCT GGGGTCCCTG GTGTTGAGGA GAAAAGCACT GGCGCCACGG CTACTCCTCC
121GGCTGCTCAG GTCCCCAACG CTCCGGGGCC ATGGAGGTGC TTCCGGCCGG AATGTGACTA
181CTGGGAGTCT CGGGGAGCCG CAGTGGCTGA GGGTAGCCAC CGGGGGGCGC CCTGGAACAT
241CGCCGGCCTT GTTCTCCGGA CGTGGGGCAG CCACCGGGGG GCGCCAGGGA GGACGCTTCG
301ATACCAAATG CCTCGCGGCT GCCACTTGGG GACGCCTTCC TGGTCCCGAA GAAACACTCC
361CAGGACAGGA CAGCTGGAAC GGGGTCCCCA GCAGGGCCGG ACTGGGCATG TGCGCCCTGG
421CCGCAGCGCT GGTGGTTCAT TGCTACAGCA AGAGTCCGTC CAACAAGGAT GCAGCCCTGT
481TGGAAGCTGC CCGTGCCAAC AATATGCAAG AAGTCAGCAG GCTGTTGTCA GAAGGTGCAG
541ATGTCAATGC AAAGCACAGA CTTGGCTGGA CAGCACTCAT GGTGGCAGCC ATCAACCGAA
601ACAACAGTGT GGTACAGGTC CTGCTTGCTG CTGGGGCTGA TCCAAACCTT GGAGATGATT
661TCAGCAGTGT TTACAAGACT GCCAAGGAAC AGGGAATCCA TTCTTTGGAA GATGGGGGAC
721AGGACGGTGC AAGCCGGCAC ATCACAAACC AGTGGACAAG TGCCCTGGAG TTCAGGAGAT
781GGCTAGGACT CCCCGCTGGC GTCCTGATCA CCCGAGAGGA TGACTTCAAC AACAGGCTGA
841ACAACCGCGC CAGTTTCAAG GGCTGCACGG CCTTGCACTA TGCTGTTCTT GCTGATGACT
901ACCGCACTGT CAAGGAGCTG CTTGATGGAG GAGCCAACCC CCTGCAGAGG AATGAAATGG
961GACACACACC CTTGGATTAT GCCCGAGAAG GGGAAGTGAT GAAGCTTCTG AGGACTTCTG
1021AAGCCAAGTA CCAAGAGAAG CAGCGGAAGC GTGAGGCTGA GGAGCGGCGC CGCTTCCCCC
1081TGGAGCAGCG ACTAAAGGAG CACATCATTG GCCAGGAGAG CGCCATCGCC ACAGTGGGTG
1141CTGCGATCCG GAGGAAGGAG AATGGCTGGT ACGATGAAGA ACACCCTCTG GTCTTCCTCT
1201TCTTGGGATC ATCTGGAATA GGAAAAACAG AGCTGGCCAA GCAGACAGCC AAATATATGC
1261ACAAAGATGC TAAAAAGGGC TTCATCAGGC TGGACATGTC CGAGTTCCAG GAGCGACACG
1321AGGTGGCCAA GTTTATTGGG TCTCCACCAG GCTACGTTGG CCATGAGGAG GGTGGCCAGC
1381TGACCAAGAA GTTGAAGCAG TGCCCCAATG CTGTGGTGCT CTTTGATGAA GTAGACAAGG
1441CCCATCCAGA TGTGCTCACC ATCATGCTGC AGCTGTTTGA TGAGGGCCGG CTGACAGATG
1501GAAAAGGGAA GACCATTGAT TGCAAGGACG CCATCTTCAT CATGACCTCC AATGTGGCCA
1561GCGACGAGAT CGCACAGCAC GCGCTGCAGC TGAGGCAGGA AGCTTTGGAG ATGAGCCGTA
1621ACCGTATTGC CGAAAACCTG GGGGATGTCC AGATAAGTGA CAAGATCACC ATCTCAAAGA
1681ACTTCAAGGA GAATGTGATT CGCCCTATCC TGAAAGCTCA CTTCCGGAGG GATGAGTTTC
1741TGGGACGGAT CAATGAGATC GTCTACTTCC TCCCCTTCTG CCACTCGGAG CTCATCCAAC
1801TCGTCAACAA GGAACTAAAC TTCTGGGCCA AGAGAGCCAA GCAAAGGCAC AACATCACGC
1861TGCTCTGGGA CCGCGAGGTG GCAGATGTGC TGGTCGACGG CTACAATGTG CACTATGGCG
1921CCCGCTCCAT CAAACATGAG GTAGAACGCC GTGTGGTGAA CCAGCTGGCA GCAGCCTATG
1981AGCAGGACCT GCTGCCAGGG GGCTGTACTT TGCGCATCAC GGTGGAGGAC TCAGACAAGC
2041AGCTACTCAA AAGCCCAGAA CTGCCCTCAC CCCAGGCTGA GAAGCGCCTC CCCAAGCTGC
2101GTCTGGAGAT CATCGACAAG GACAGCAAGA CTCGCAGACT GGACATCCGG GCACCACTGC
2161ACCCTGAGAA GGTGTGCAAC ACCATCTACC CAACTTTCTT GTACAAAGTt ggcattataa
2221gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)