Construct: ORF ccsbBroadEn_04370
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008229.1_s300c1, BRDN0000395619
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF397 (84307)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84307 | ZNF397 | zinc finger protein 397 | NM_032347.3 | 100% | 100% | |
| 2 | human | 84307 | ZNF397 | zinc finger protein 397 | NM_001135178.3 | 47.3% | 40.5% | (many diffs) |
| 3 | human | 84307 | ZNF397 | zinc finger protein 397 | XM_011526231.2 | 47.3% | 40.5% | (many diffs) |
| 4 | human | 84307 | ZNF397 | zinc finger protein 397 | XM_017026042.1 | 47.3% | 40.5% | (many diffs) |
| 5 | human | 84307 | ZNF397 | zinc finger protein 397 | XM_006722558.2 | 45.7% | 39.1% | (many diffs) |
| 6 | human | 84307 | ZNF397 | zinc finger protein 397 | XM_011526229.2 | 45.7% | 39.1% | (many diffs) |
| 7 | human | 84307 | ZNF397 | zinc finger protein 397 | XM_011526230.2 | 45.7% | 39.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 891
- ORF length:
- 825
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TGTGGAATCT GGAGTGATTT CAACCCTGAT ACCTCAGGAT CCTCCGGAAC 121 AAGAACTAAT ACTAGTGAAA GTAGAAGATA ACTTTTCCTG GGATGAGAAA TTTAAGCAGA 181 ATGGGAGTAC TCAATCCTGC CAAGAATTGT TTCGTCAGCA ATTCAGAAAA TTTTGCTACC 241 AGGAGACACC TGGGCCCCGG GAGGCTCTGA GCCGACTCCA GGAACTTTGC TATCAGTGGC 301 TAATGCCAGA GTTGCACACA AAGGAGCAGA TCTTAGAACT GCTGGTACTG GAGCAGTTCC 361 TGAGCATTCT GCCTGAGGAG CTGCAGATCT GGGTTCAGCA ACATAATCCA GAAAGCGGCG 421 AGGAAGCTGT GACCCTGTTG GAGGATTTAG AGAGGGAGTT TGATGACCCA GGGCAGCAGG 481 TCCCAGCTAG TCCACAGGGA CCAGCAGTGC CATGGAAGGA TTTAACATGT CTCAGAGCAT 541 CCCAAGAGTC AACAGACATC CACCTCCAGC CCTTAAAGAC ACAGCTGAAA TCCTGGAAAC 601 CATGCCTTTC CCCTAAAAGT GATTGTGAGA ACAGTGAAAC AGCAACAAAA GAGGGCATCT 661 CAGAAGAAAA ATCACAGGGA CTCCCTCAGG AACCTTCATT TCGAGGAATT AAGTTGTCCA 721 GACCTCCCAA AGCTTCTTCA GCTATCCGTT GGGAATGTGT TTCTCCAGGA AGTTTTCCCG 781 GCGATATCAT AGCTGCTGAG GCTACACATT CAACAATTTC TTGCTTTGCC ATCAACACTT 841 TGCCAGCCAC CATCCTGCCA TCTAAAAATG TGAATAGAAA GTATTTTTCC TGCCCAACTT 901 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac