Construct: ORF ccsbBroadEn_04370

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008229.1_s300c1, BRDN0000395619
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF397 (84307)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84307 ZNF397 zinc finger protein 397 NM_032347.3 100% 100%
2 human 84307 ZNF397 zinc finger protein 397 NM_001135178.3 47.3% 40.5% (many diffs)
3 human 84307 ZNF397 zinc finger protein 397 XM_011526231.2 47.3% 40.5% (many diffs)
4 human 84307 ZNF397 zinc finger protein 397 XM_017026042.1 47.3% 40.5% (many diffs)
5 human 84307 ZNF397 zinc finger protein 397 XM_006722558.2 45.7% 39.1% (many diffs)
6 human 84307 ZNF397 zinc finger protein 397 XM_011526229.2 45.7% 39.1% (many diffs)
7 human 84307 ZNF397 zinc finger protein 397 XM_011526230.2 45.7% 39.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
891
ORF length:
825
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TGTGGAATCT GGAGTGATTT CAACCCTGAT ACCTCAGGAT CCTCCGGAAC
121AAGAACTAAT ACTAGTGAAA GTAGAAGATA ACTTTTCCTG GGATGAGAAA TTTAAGCAGA
181ATGGGAGTAC TCAATCCTGC CAAGAATTGT TTCGTCAGCA ATTCAGAAAA TTTTGCTACC
241AGGAGACACC TGGGCCCCGG GAGGCTCTGA GCCGACTCCA GGAACTTTGC TATCAGTGGC
301TAATGCCAGA GTTGCACACA AAGGAGCAGA TCTTAGAACT GCTGGTACTG GAGCAGTTCC
361TGAGCATTCT GCCTGAGGAG CTGCAGATCT GGGTTCAGCA ACATAATCCA GAAAGCGGCG
421AGGAAGCTGT GACCCTGTTG GAGGATTTAG AGAGGGAGTT TGATGACCCA GGGCAGCAGG
481TCCCAGCTAG TCCACAGGGA CCAGCAGTGC CATGGAAGGA TTTAACATGT CTCAGAGCAT
541CCCAAGAGTC AACAGACATC CACCTCCAGC CCTTAAAGAC ACAGCTGAAA TCCTGGAAAC
601CATGCCTTTC CCCTAAAAGT GATTGTGAGA ACAGTGAAAC AGCAACAAAA GAGGGCATCT
661CAGAAGAAAA ATCACAGGGA CTCCCTCAGG AACCTTCATT TCGAGGAATT AAGTTGTCCA
721GACCTCCCAA AGCTTCTTCA GCTATCCGTT GGGAATGTGT TTCTCCAGGA AGTTTTCCCG
781GCGATATCAT AGCTGCTGAG GCTACACATT CAACAATTTC TTGCTTTGCC ATCAACACTT
841TGCCAGCCAC CATCCTGCCA TCTAAAAATG TGAATAGAAA GTATTTTTCC TGCCCAACTT
901TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)