Construct: ORF ccsbBroadEn_04409
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007904.1_s300c1, BRDN0000394197
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- TXLNGY (246126)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 246126 | TXLNGY | taxilin gamma pseudogene, Y... | NR_045128.1 | 6.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 408
- ORF length:
- 342
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttTAAATGAA CTCACATAGC AGTAGCTTCT TTTTCGCGAG CTTTATCTGT AGGTCTGTAC 121 TTTTAACATA CATTATTTTG GATAATAAGG AGGAACATAT GCAGCAGAAA AAAGAGGAGG 181 AAGAAGTTCT TAAAGAAGTA ACTGCACATT TCCAAATTAC TTTAACTGAA ACTCAAGCCC 241 AGCTGGAACA GCATGAAATA CACAATGCCA AACTGCAGCA GGAGAACATG GAAATGGGAG 301 AAAAGCTAAA GAAGCTCACT GACCAGTATG CACTGAGGGA AGAGGTAAAC GGCGTTTGGT 361 TTGTTTATAG ACAGCTGCTC ACCAGTAGCA AAAGCTACAC CCTACCGTAA ccaactttct 421 tgtacaaagt tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac