Construct: ORF ccsbBroadEn_04433
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017819.1_s300c1, BRDN0000395693
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRCH3 (84859)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84859 | LRCH3 | leucine rich repeats and ca... | NM_032773.3 | 99.9% | 100% | 1314T>C |
| 2 | human | 84859 | LRCH3 | leucine rich repeats and ca... | XM_017007350.2 | 92.5% | 92.4% | (many diffs) |
| 3 | human | 84859 | LRCH3 | leucine rich repeats and ca... | NM_001365715.1 | 91.5% | 91.3% | (many diffs) |
| 4 | human | 84859 | LRCH3 | leucine rich repeats and ca... | NM_001363887.1 | 88.5% | 88.4% | (many diffs) |
| 5 | human | 84859 | LRCH3 | leucine rich repeats and ca... | NM_001365717.1 | 88.4% | 88.2% | (many diffs) |
| 6 | human | 84859 | LRCH3 | leucine rich repeats and ca... | NM_001365718.1 | 86.8% | 86.7% | (many diffs) |
| 7 | human | 84859 | LRCH3 | leucine rich repeats and ca... | XM_005269363.3 | 85.5% | 85.4% | (many diffs) |
| 8 | human | 84859 | LRCH3 | leucine rich repeats and ca... | NM_001365716.1 | 84% | 83.9% | (many diffs) |
| 9 | human | 84859 | LRCH3 | leucine rich repeats and ca... | XM_017007351.2 | 83.3% | 83.1% | (many diffs) |
| 10 | human | 84859 | LRCH3 | leucine rich repeats and ca... | XM_005269367.3 | 81% | 80.9% | (many diffs) |
| 11 | human | 84859 | LRCH3 | leucine rich repeats and ca... | XM_011513242.3 | 80.9% | 80.3% | (many diffs) |
| 12 | human | 84859 | LRCH3 | leucine rich repeats and ca... | XM_017007352.2 | 78.8% | 78.7% | (many diffs) |
| 13 | human | 84859 | LRCH3 | leucine rich repeats and ca... | NM_001365719.2 | 77.2% | 76.9% | (many diffs) |
| 14 | human | 84859 | LRCH3 | leucine rich repeats and ca... | XR_001740329.2 | 48% | (many diffs) | |
| 15 | human | 84859 | LRCH3 | leucine rich repeats and ca... | NR_158582.1 | 19.5% | (many diffs) | |
| 16 | mouse | 70144 | Lrch3 | leucine-rich repeats and ca... | NM_001081255.1 | 77.4% | 78.9% | (many diffs) |
| 17 | mouse | 70144 | Lrch3 | leucine-rich repeats and ca... | NM_001310674.1 | 75.7% | 77.2% | (many diffs) |
| 18 | mouse | 70144 | Lrch3 | leucine-rich repeats and ca... | XM_006522524.3 | 75.7% | 77.2% | (many diffs) |
| 19 | mouse | 70144 | Lrch3 | leucine-rich repeats and ca... | XM_006522525.2 | 75.6% | 77% | (many diffs) |
| 20 | mouse | 70144 | Lrch3 | leucine-rich repeats and ca... | XM_006522526.3 | 73.8% | 75% | (many diffs) |
| 21 | mouse | 70144 | Lrch3 | leucine-rich repeats and ca... | NM_001310672.1 | 73.8% | 74.7% | (many diffs) |
| 22 | mouse | 70144 | Lrch3 | leucine-rich repeats and ca... | XM_006522527.3 | 73.7% | 74.9% | (many diffs) |
| 23 | mouse | 70144 | Lrch3 | leucine-rich repeats and ca... | XM_006522528.2 | 72.1% | 73.1% | (many diffs) |
| 24 | mouse | 70144 | Lrch3 | leucine-rich repeats and ca... | XM_006522530.2 | 70.1% | 71.4% | (many diffs) |
| 25 | mouse | 70144 | Lrch3 | leucine-rich repeats and ca... | XM_006522531.2 | 70% | 71.3% | (many diffs) |
| 26 | mouse | 70144 | Lrch3 | leucine-rich repeats and ca... | XM_006522533.3 | 68.2% | 69.3% | (many diffs) |
| 27 | mouse | 70144 | Lrch3 | leucine-rich repeats and ca... | NM_001310673.1 | 68% | 68.9% | (many diffs) |
| 28 | mouse | 70144 | Lrch3 | leucine-rich repeats and ca... | XR_001781866.1 | 21.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2202
- ORF length:
- 2136
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGCCGCGGGC TTGGTCGCTG TGGCAGCGGC TGCCGAGTAC TCTGGCACGG 121 TAGCGTCGGG AGGTAACCTC CCTGGTGTTC ACTGCGGCCC AAGCTCCGGG GCAGGCCCTG 181 GTTTTGGCCC GGGCTCGTGG AGCCGCTCTC TCGATCGAGC CCTGGAGGAG GCGGCGGTCA 241 CTGGGGTGCT GAGCCTGAGC GGCCGGAAAC TGAGGGAGTT TCCCCGGGGA GCGGCCAACC 301 ACGACCTGAC GGACACCACC CGGGCGGACC TGTCGCGAAA TCGCCTTTCA GAAATTCCTA 361 TAGAAGCATG TCACTTTGTT TCTCTGGAAA ATCTCAACTT GTACCAAAAT TGTATTCGTT 421 ATATTCCAGA GGCAATTTTA AACCTACAAG CTCTAACATT CTTAAATATT AGTCGGAACC 481 AACTGTCAAC ATTGCCGGTA CACTTGTGTA ATTTGCCATT GAAAGTCTTA ATTGCTAGTA 541 ATAACAAATT GGTGTCACTT CCAGAAGAAA TTGGACACCT TAGACATTTG ATGGAACTTG 601 ATGTGAGCTG CAATGAAATT CAAACTATAC CTTCCCAAAT TGGTAACCTG GAGGCCTTGA 661 GAGACCTTAA TGTAAGAAGA AATCACCTAG TACATTTGCC TGAAGAGCTG GCGGAGTTGC 721 CTTTGATACG GTTAGACTTC TCATGCAATA AAATTACCAC AATCCCTGTT TGTTATCGGA 781 ACCTCAGGCA CCTACAGACG ATCACCCTAG ATAACAATCC ACTACAATCA CCTCCTGCAC 841 AGATATGTAT AAAAGGCAAA GTCCACATAT TTAAATACCT GAACATACAA GCTTGTAAGA 901 TTGCTCCAGA TCTGCCGGAT TATGATAGGA GACCGTTGGG TTTTGGCTCC TGCCATGAAG 961 AACTGTACTC AAGTCGCCCT TATGGAGCCC TTGATTCAGG CTTCAATAGT GTGGACAGTG 1021 GTGATAAGAG ATGGTCAGGG AATGAACCTA CAGATGAATT TTCAGATCTG CCTCTTCGAG 1081 TAGCAGAGAT TACTAAAGAA CAAAGACTAC GAAGAGAAAG CCAGTACCAA GAGAACCGCG 1141 GCAGTTTGGT AGTAACAAAC GGCGGAGTGG AACATGATCT GGATCAGATT GACTACATAG 1201 ACAGCTGCAC CGCAGAGGAA GAGGAGGCCG AGGTGAGACA GCCCAAGGGA CCAGACCCAG 1261 ACAGCCTTAG TTCACAGTTT ATGGCGTATA TTGAACAGCG GCGAATCTCT CATGAGGGTT 1321 CACCAGTAAA GCCAGTAGCC ATTAGGGAGT TTCAAAAAAC AGAAGATATG AGAAGATACT 1381 TACATCAAAA CAGGGTTCCA GCTGAGCCAT CTTCCCTCCT GTCACTATCA GCAAGTCACA 1441 ATCAGCTGTC ACACACAGAC CTGGAACTTC ATCAGAGAAG GGAGCAGTTA GTAGAGCGCA 1501 CTCGGAGAGA GGCTCAGCTT GCTGCCCTGC AGTATGAGGA GGAGAAAATA AGGACCAAGC 1561 AGATCCAGAG AGATGCTGTC CTGGACTTTG TCAAACAAAA AGCATCACAA AGTCCACAAA 1621 AACAGCACCC GCTCCTAGAT GGCGTAGATG GTGAGTGCCC CTTCCCATCC AGAAGGTCTC 1681 AGCACACTGA TGATAGTGCC TTGTGCATGT CGCTGTCAGG GTTGAATCAA GTGGGCTGTG 1741 CTGCTACCCT GCCTCATTCT TCTGCCTTCA CGCCTCTTAA GAGTGATGAC AGACCTAATG 1801 CTCTATTAAG TTCACCTGCA ACAGAAACAG TTCATCATTC CCCTGCATAT TCTTTTCCTG 1861 CTGCTATCCA GAGAAATCAG CCTCAGCGCC CTGAAAGCTT CCTTTTCCGA GCAGGTGTCA 1921 GGGCAGAAAC CAACAAAGGT CATGCTTCAC CCCTTCCTCC ATCTGCTGCA CCTACCACTG 1981 ATTCTACAGA TTCCATAACA GGACAGAATT CAAGACAGAG AGAAGAAGAG CTGGAATTAA 2041 TAGACCAACT GCGTAAACAT ATTGAGTACC GGTTGAAAGT GTCTCTACCT TGTGATCTCG 2101 GAGCAGCTCT AACTGACGGT GTTGTTCTTT GCCATTTGGC CAATCATGTG CGACCTCGAT 2161 CTGTCCCAAG CATTCATGTT CCCTCACCAG CTGTAGTAAG TTGCCCAACT TTCTTGTACA 2221 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac