Construct: ORF ccsbBroadEn_04458
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017247.1_s300c1, BRDN0000397728
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C1orf94 (84970)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84970 | C1orf94 | chromosome 1 open reading f... | NM_032884.5 | 100% | 100% | |
| 2 | human | 84970 | C1orf94 | chromosome 1 open reading f... | NM_001134734.2 | 68.2% | 68.2% | 1_570del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 67
- ORF end:
- 1291
- ORF length:
- 1224
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TTACAAAAAA 61 GTTGGCATGC CCGTTATCAG CAGCAGGCAG GACTGTGATT CTGCCACTTC TACTGTCACA 121 GACATTCTGT GTGCCGCCGA GGTCAAGAGC AGCAAGGGGA CAGAGGACAG GGGCCGCATC 181 CTAGGTGACT CCAACTTGCA AGTCAGCAAG CTTCTGTCCC AGTTCCCACT GAAGTCCACT 241 GAGACATCCA AGGTCCCTGA CAACAAGAAT GTGCTGGACA AGACAAGGGT CACCAAGGAC 301 TTCCTACAGG ACAACCTGTT CAGTGGCCCT GGACCCAAGG AGCCCACAGG GCTGAGCCCA 361 TTTCTGCTGC TGCCTCCCCG ACCTCCTCCT GCACGTCCTG ACAAGCTCCC TGAGCTCCCT 421 GCTCAGAAGA GGCAGCTCCC AGTGTTTGCC AAGATCTGTT CCAAGCCCAA GGCTGACCCT 481 GCTGTGGAGA GGCACCACTT GATGGAATGG AGCCCTGGCA CCAAGGAGCC AAAAAAGGGT 541 CAAGGGAGCC TCTTTCTCAG CCAGTGGCCC CAGAGCCAGA AGGACGCCTG TGGTGAGGAG 601 GGTTGCTGTG ACGCAGTGGG CACCGCATCA CTGACCCTGC CGCCCAAGAA ACCTACATGT 661 CCAGCCGAGA AGAACTTGCT CTATGAGTTC CTTGGGGCCA CCAAGAACCC AAGCGGGCAG 721 CCGAGACTTC GAAACAAAGT GGAAGTGGAT GGGCCGGAGC TGAAATTTAA CGCACCTGTG 781 ACGGTTGCTG ACAAGAACAA CCCGAAGTAC ACAGGGAATG TTTTCACTCC ACACTTTCCT 841 ACAGCCATGA CCTCAGCAAC CCTGAACCAG CCACTCTGGC TCAACCTGAA CTATCCACCT 901 CCACCAGTGT TCACGAATCA CTCTACCTTC TTGCAGTATC AGGGCCTGTA CCCACAGCAG 961 GCAGCGAGGA TGCCCTATCA GCAGGCTTTG CACCCGCAGC TGGGATGTTA CTCCCAACAG 1021 GTGATGCCAT ACAACCCACA GCAGATGGGA CAGCAGATCT TCCGCTCTTC CTACACCCCT 1081 CTGCTGAGCT ACATCCCTTT TGTCCAGCCC AATTATCCCT ACCCTCAGAG GACACCTCCA 1141 AAGATGTCTG CCAACCCCCG AGACCCTCCC CTAATGGCAG GAGATGGACC GCAGTACCTC 1201 TTTCCCCAAG GATATGGGTT CGGCTCGACA TCCGGAGGGC CCTTGATGCA CAGCCCCTAT 1261 TTTTCTTCCA GTGGGAATGG CATAAACTTT TACCCAACTT TCTTGTACAA AGTtggcatt 1321 ataagaaagc attgcttatc aatttgttgc aacgaac