Construct: ORF ccsbBroadEn_04508
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003138.1_s300c1, BRDN0000384999
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- UCN2 (90226)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 90226 | UCN2 | urocortin 2 | NM_033199.4 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 402
- ORF length:
- 336
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC CAGGTGTGCT CTGCTGTTGC TGATGGTCCT GATGTTGGGC AGAGTCCTGG 121 TTGTCCCAGT GACCCCTATC CCAACCTTCC AGCTCCGCCC TCAGAATTCT CCCCAGACCA 181 CTCCCCGACC TGCGGCCTCA GAGAGCCCCT CAGCTGCTCC CACATGGCCG TGGGCTGCCC 241 AGAGCCACTG CAGCCCCACC CGCCACCCTG GCTCGCGCAT TGTCCTATCG CTGGATGTCC 301 CCATCGGCCT CTTGCAGATC TTACTGGAGC AAGCCCGGGC CAGGGCTGCC AGGGAGCAGG 361 CCACCACCAA CGCCCGCATC CTGGCCCGTG TCGGCCACTG CTGCCCAACT TTCTTGTACA 421 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac