Construct: ORF ccsbBroadEn_04522
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009977.1_s300c1, BRDN0000396462
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF625 (90589)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 90589 | ZNF625 | zinc finger protein 625 | NM_145233.4 | 82.2% | 82.2% | 1_198del |
| 2 | human | 90589 | ZNF625 | zinc finger protein 625 | NR_037801.2 | 54% | 1_370del;1289_1698del | |
| 3 | human | 163059 | ZNF433 | zinc finger protein 433 | NM_001308351.1 | 42.5% | 36.4% | (many diffs) |
| 4 | human | 163059 | ZNF433 | zinc finger protein 433 | NM_001308355.1 | 42.5% | 36.4% | (many diffs) |
| 5 | human | 163059 | ZNF433 | zinc finger protein 433 | NM_001308357.1 | 42.5% | 36.4% | (many diffs) |
| 6 | human | 163059 | ZNF433 | zinc finger protein 433 | XM_006722661.3 | 42.5% | 36.4% | (many diffs) |
| 7 | human | 163059 | ZNF433 | zinc finger protein 433 | NM_001308348.1 | 40.5% | 34.7% | (many diffs) |
| 8 | human | 163059 | ZNF433 | zinc finger protein 433 | NM_001308346.1 | 40.4% | 34.6% | (many diffs) |
| 9 | human | 163059 | ZNF433 | zinc finger protein 433 | XM_011527728.2 | 40.4% | 34.6% | (many diffs) |
| 10 | human | 163059 | ZNF433 | zinc finger protein 433 | XM_011527729.2 | 40.4% | 34.6% | (many diffs) |
| 11 | human | 163059 | ZNF433 | zinc finger protein 433 | NM_001080411.2 | 40.3% | 34.5% | (many diffs) |
| 12 | human | 163059 | ZNF433 | zinc finger protein 433 | XM_011527725.2 | 39.7% | 34% | (many diffs) |
| 13 | human | 163059 | ZNF433 | zinc finger protein 433 | XM_017026413.1 | 39.7% | 34% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 984
- ORF length:
- 918
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG AGAGAGACTC TTAGAAAGTA AGAAAGATCA TCAGCATGGA GAAATTTTGA 121 CCCAGGTTCC AGATGACATG CTGAAGAAGA AAACTCCCCG AGTAAAATCA TGTGGAGAAG 181 TCAGCGTGGG TCATGCATCC CTTAATAGGC ACCACAGAGC TGACACTGGA CACAAGCCAT 241 ATGAGTATCA GGAATATGGA CAGAAGCCAT ATAAATGTAC ATACTGTAAG AAAGCCTTCA 301 GTGATCTCCC CTACTTTCGA ACACATGAAT GGGCTCACAC TGGGGGGAAA CCTTATGATT 361 GTGAGGAATG TGGAAAAAGC TTTATTTCCC GTTCAAGCAT TCGAAGACAC AGGATAATGC 421 ACAGTGGAGA TGGACCCTAC AAATGTAACT TTTGTGGGAA AGCCTTGATG TGTCTCAGTT 481 TGTATCTTAT CCACAAACGA ACTCACACTG GAGAGAAACC ATATGAATGT AAACAGTGTG 541 GTAAAGCCTT TAGTCATTCT GGTAGCCTTC GAATACATGA AAGAACTCAC ACTGGAGAGA 601 AGCCTTATGA ATGCAGTGAG TGTGGGAAAG CATTCCATAG TTCCACATGC CTCCATGCAC 661 ATAAAATAAC TCACACTGGG GAGAAGCCGT ATGAATGTAA ACAGTGTGGG AAAGCCTTTG 721 TTTCTTTCAA TTCCGTTCGA TATCATGAAA GAACTCACAC TGGAGAGAAG CCCTATGAAT 781 GTAAGCAATG TGGGAAAGCC TTCAGATCTG CCTCGCACCT TCGAACACAT GGAAGGACTC 841 ACACTGGAGA GAAACCCTAT GAATGTAAAC AATGTGGTAA AGCCTTTGGA TGTGCCTCGA 901 GCGTTAAAAT CCATGAAAGG ACTCACACTG GAGAAAAACC CTGTAGCTCC AACACTTCGA 961 AAGGCCAAGG CGAGAAGATT GCTTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1021 agcattgctt atcaatttgt tgcaacgaac